ID   AB179972; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179972;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HJ1S.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 53f0c6cfbd1eb48c4a876ecc53fb48c2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HJ1S"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6E7"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6E7"
FT                   /protein_id="BAD20386.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIIQHLRSKTSEPVTHEAKSKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFIHMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQEHFGNIRMDLLGEDELDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVSVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 493 A; 337 C; 355 G; 342 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc agttcaccat        60
     caaaacacca gtgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgcta       120
     atcacgcgag atgtattggt gctttgtgga gttcttggag gtggattgtg gatgattatt       180
     cagcacctgc ggtcaaagac atccgaaccc gtaacccacg aagcgaaaag caagaggcaa       240
     agacagaaac taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gacgatgata ccatagagca tttctttggt gatgcctaca caaagaaagg gaagagcaag       360
     ggcagaacac gtggtatcgg acacaaaaac aggaagttca tccacatgta tgggtttgat       420
     cctgaggatt tctctgcagt tcgtttcgtg gatccactca caggagcgac gttggatgac       480
     aacccgttca cagacatcac ccttgtgcaa gagcacttcg gcaacataag aatggactta       540
     ctcggggagg atgagctgga ctcaaatgaa atacgtgtga ataagactat tcaagcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctt       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa cgaattgagg       720
     cagactggaa aggctcagcc cattaacata gacgaagtgc caagagctaa taatgaactc       780
     gtctcagtgg accacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaat cgacacctct ttgagcggaa taacggcgaa       960
     ctcataataa aatcgcgaca tggtgagttc gtgatcaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagtacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacaaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt gggttacata gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgccg agaagtacct tcataccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tataacacta gtgccattag ttggggctct      1440
     ttgaatatac aagcatcaca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//