ID   AB179968; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179968;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZJ25.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 1e2205a975895306311aa12743335b84.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZJ25"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6F1"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6F1"
FT                   /protein_id="BAD20382.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNVRDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFSNIRMNLLEEDELDSNEIRLNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 490 A; 337 C; 359 G; 341 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctttagaggc agtccaccat        60
     caaaacacca gtgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgctg       120
     atcacgcgag atgtgttggt gctttgtgga gttcttggag gtggattgtg gatggttata       180
     caacacctgc gatcgaagat ttccgaaccc gtaacccacg aagcgaaagg caagaggcaa       240
     agacagaaac taaagtttcg caatgtccga gataacaaga tgggtagaga agtgtacgga       300
     gacgatgata ccatagagca tttctttggt gatgcctaca caaagaaagg gaagagcaag       360
     ggtaggacac gtggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagcgac gttggatgac       480
     aacccgctca cagacatcac ccttgtgcaa gagcacttta gtaacataag aatgaacttg       540
     ctcgaggagg atgagctgga ttcaaatgaa atacgtttga ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa cgaattgagg       720
     cagaccggaa aggctcaacc cattaacata gacgaagtgc caagagctaa taatgaactc       780
     gtcccagtgg atcacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca tggtgagttc gtgattaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggttttag gcaacctgag aaaggtgagc gaatctgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtgta gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc aattttggaa acactggatt agcacgaaag acggccaatg cgggagtcca      1260
     atggtgagca cgaaagacgg gaaaatactc ggattacaca gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc cttcccagat gattttgccg agaagtatct tcacaccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tataacacta gtgccatcag ctggggctct      1440
     ttgaatatac aagcatcgca accgtcaggc ttgtttaagg taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//