ID   AB179966; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179966;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZH36.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 02e5dec02dd846af6edb168097dc54eb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZH36"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6F3"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6F3"
FT                   /protein_id="BAD20380.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRTKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDA
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMILLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPMDLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 495 A; 321 C; 361 G; 350 T; 0 other;
     tctgacggga tttctcgcca ttttatgagt gaatatggag cactcgaggc agttcaccat        60
     caaaacacca acgacatgag caagttctta aagctgaagg gcaaatggaa caaaacgctt       120
     atcacgcgtg atgtgctagt gatttgtgga gttcttggag gaggaatatg gatgatcatc       180
     caacacctgc gtacgaagat ctccgaaccc gtaacccacg aagcaaaagg caagaggcag       240
     agacagaagt tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtttacgga       300
     gacgacgacg ccattgaaca cttctttgga gatgcctaca caaagaaggg aaagagtaaa       360
     ggcagaactc gtggcctcgg ccataaaaac aggaaattca tcaatatgta tggattcgat       420
     cctgaagact tctctgcagt tagattcgta gatccactca caggggcaac gatagatgaa       480
     agtccaatca tggacatagc ccttgtgcag gaacatttcg gaaaaatacg gatgatttta       540
     cttggagaag acgaactgga acccgatgag ttgcgaatga ataagacgat tcaggcttac       600
     tacatgaata acaaaacagg caaggctctg aaagtggatt tgacaccaca cataccacta       660
     aaggtatgtg accttcatgc aacaattgct ggtttcccgg aacgagaaca cgaactgagg       720
     caaactggaa aagctcagcc tatggactta agcgaagtac ctaaagctaa cactgagcta       780
     attccagttg accatgaaag tagctccatg tttagagggt tgcgcgacta caacccaata       840
     tccaataaca tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg       900
     gttggttttg gaccactcat attgacgaac cggcatctct ttgaaaggaa taatggtgaa       960
     ctcgtgataa agtcaagaca tggtgagttt gtgattaaga acacgactca gctacacttg      1020
     ctaccgattc cggacaggga ccttttgcta atccgactac ctaaagacat tccacccttc      1080
     ccgcaaaaac tgggatttag acaacctgag aagggtgaga ggatttgtat ggtgggttcc      1140
     aactttcaaa caaagagcat aacgagtgta gtttctgaga ctagcacaat aatgccagtg      1200
     gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg tggaagcccg      1260
     atggtgagca caaaggatgg aaaaatactt gggctacaca gcctggcaaa tttccaaaat      1320
     tccatcaact actttgccgc cttcccagat gattttgctg agaaatacct ctacactatt      1380
     gaggcacacg agtgggtcaa gcattggaag tataacacca gtgcaattag ttggggctcc      1440
     ctaaatatac aagcatcgca gccagcgggc ttatttaaag tgagtaaact aatatcagac      1500
     cttgacagca cagcggttta tgcacaa                                          1527
//