ID   AB179961; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179961;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZC1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; fa273b4f9759a1a378189c8ccc7d5cde.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZC1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6F8"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6F8"
FT                   /protein_id="BAD20375.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIIQHLRSKISEPVTHEAKSKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQEHFGNIRMNLLGEDDLDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNKLVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSFNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 497 A; 335 C; 349 G; 346 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc agtccatcat        60
     caaaacacca gtgacatgag caaattcctt aagcttaagg gcaaatggaa caaaacacta       120
     atcacgcgag atgtgttggt gctttgtgga gttcttggag gtggattgtg gatgattatt       180
     cagcacctgc gatcaaagat ttccgaaccc gtaacccacg aagcgaaaag caagaggcaa       240
     agacagaaac taaagtttcg caatgcccga gataacaaga tgggtagaga agtgtacgga       300
     gacgatgata ccatagagca tttctttggt gacgcctaca caaagaaagg gaagagcaaa       360
     ggtaggacac gtggtctcgg acacaaaaac aggaagttca tcaatatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagcgac gttggatgac       480
     aacccgttca cagacatcac ccttgtgcaa gagcactttg gtaacataag aatgaacttg       540
     ctcggggagg atgacctgga tccaaatgaa atacgtgtga ataagacaat tcaggcctat       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa cgaactgagg       720
     cagactggaa aggctcagcc cattaacata gacgaagtgc caagagctaa taataaactc       780
     gtcccagtgg atcacgagag taactccatg ttcagaggat tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggcgaa       960
     ctcataataa aatcacgaca tggtgagttc gtgatcaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tctcctgtta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacaaaag atggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt gggttacata gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgccg agaagtacct tcataccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tacaacacta gtgccattag ttggggctct      1440
     tttaatatac aagcatcaca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//