ID   AB179960; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179960;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK56.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 351d703dc5e803ccef432829edab91db.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHYK56"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6F9"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6F9"
FT                   /protein_id="BAD20374.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDA
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDSPF
FT                   TDIALVQEHFGNIRMDLLGEDELDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDDVPRANNELIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSHFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 490 A; 340 C; 355 G; 342 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc agttcaccat        60
     caaaacacca gtgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacacta       120
     atcacgagag atgtgttggt gctttgtgga gttcttggag gtggattgtg gatggttgtt       180
     cagcacctgc ggtcaaagat ttccgaaccc gtaacccacg aagcgaaagg caagaggcaa       240
     agacagaaac taaagtttcg caacgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gatgatgatg ccatcgaaca tttcttcggt gatgcctaca caaagaaagg gaaaagcaag       360
     ggtaggacgc gtggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagact tctctgcagt tcgtttcgtg gatccactca caggagcgac gttggatgac       480
     agccctttca cagacatcgc ccttgtgcaa gagcactttg gtaatataag aatggacttg       540
     cttggggaag atgaactgga ctcaaatgaa atacgcgtga ataaaacaat ccaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacgccaca catacctctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa tgaattgagg       720
     cagactggaa aggcgcagcc cattaacata gacgacgtgc caagagctaa taatgaactc       780
     atcccagtgg accacgagag taattccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag cgtcaaactc gttatatgga       900
     gtcggttttg gaccactcat attaacgaac cgacaccttt tcgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca cggtgaattc gtgattaaaa acacaaccca gctacatctg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacat cccacccttc      1080
     ccacagaaat tgggtttcag gcaacctgag aagggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc atttttggaa acactggatt agcactaaag acggccaatg cggaagtcca      1260
     atggtgagca caaaagatgg aaaaatactc ggattacata gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gactttgccg aaaagtacct tcataccatt      1380
     gaagcacatg agtgggtcaa gcattggaaa tataacacta gtgccatcag ttggggctct      1440
     ttgaacatac aagcatcgca accgtcaggc ttgtttaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//