ID   AB179959; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179959;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK20.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 096d70b1590c320b6b8f2f176f6b5b66.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHYK20"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6G0"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6G0"
FT                   /protein_id="BAD20373.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDIALVQEHFGNIRMDLLGEDELDSNEIRTNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPININEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGFFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 489 A; 331 C; 358 G; 349 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc cgttcaccat        60
     caaaacacta gcgacatgag taaatttctc aagcttaagg gcaaatggaa taaaacacta       120
     atcacgagag atgtgttggt actttgtgga gttcttggag gtggattgtg gatgattgtt       180
     cagcacttgc ggtcaaagat ttccgaacct gtaacccacg aagcgaaagg caagaggcaa       240
     aggcagaaac taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gatgatgata ccatcgaaca tttcttcggt gatgcctaca caaagaaagg gaagagcaag       360
     ggtaggacgc gtggtatcgg acacaaaaac aggaagttca tcaacatgta tggatttgat       420
     cctgaagact tctctgcagt tcgtttcgtg gatccactta caggagcgac gttggacgac       480
     aaccctttca cagacatcgc tcttgtgcaa gagcactttg gtaatataag aatggacttg       540
     ctcggggagg atgagctgga ctcaaatgaa atacgtacga ataagacaat tcaggcgtac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggacc tgacaccaca catacctctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa tgaactgagg       720
     cagactggaa aggctcagcc cattaacata aacgaagtgc caagagctaa taatgaactc       780
     gttccagtgg accacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca tggtgagttc gtgatcaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttgc caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacaaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt gggttacata gcctagcaaa cttccagaac      1320
     tccatcaatt acttcgctgc tttcccagat gattttgccg agaagtatct tcataccatt      1380
     gaagcacatg agtgggtcaa gcattggaaa tacaacacta gtgccattag ttggggctct      1440
     ttgaacatac aagcatcgca accgtcaggc tttttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//