ID   AB179956; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179956;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHSC2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; d7c91a0deab16327294830dffeadc329.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHSC2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6G3"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6G3"
FT                   /protein_id="BAD20370.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDA
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDSPF
FT                   TDITLVQEHFGNIRMNLLEEDELDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 487 A; 342 C; 360 G; 338 T; 0 other;
     accgatggga tatctcggca tttcatgagt gagttcggag ctcttgaggc agttcaccat        60
     caaaacacca gcgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgcta       120
     atcacgcgag atgtgttggt gctttgcgga gttcttggag gtggattgtg gatgattatt       180
     cagcacctgc ggtcaaagat ttccgaaccc gtaacccacg aagcgaaagg caagaggcag       240
     agacagaaac taaaatttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gatgatgatg ccatcgaaca tttcttcggt gatgcctaca caaagaaagg gaaaagcaag       360
     ggtaggacgc gtggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt ccgtttcgtg gatccactca caggagcgac gttggatgac       480
     agcccgttca cagacatcac ccttgtgcaa gagcactttg gtaacataag aatgaacttg       540
     ctcgaggagg atgagctgga ttcaaatgaa atacgtgtga ataagacaat tcaggcctac       600
     tacatgaata ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctc       660
     aaagtgtgtg atcttcacgc aaccattgct ggattcccgg agcgagaaaa cgaactgagg       720
     cagactggaa aggctcagcc catcaacata gacgaagtgc caagagctaa taatgaactc       780
     gtcccagtgg accacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcgaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cggcacctct ttgagcggaa taacggcgaa       960
     ctcataataa aatcacgaca tggtgagttc gtgatcaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggttttag gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcacaaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt gggttacata gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgccg agaagtacct tcataccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tacaacacta gtgccattag ttggggctct      1440
     ttgaatatac aagcatcaca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//