ID   AB179955; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179955;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; b7ee59e65ef52147262039f53dca53e5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN5"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6G4"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6G4"
FT                   /protein_id="BAD20369.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQEHFGNIRMNLLEEDELDSNEIRLNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPISIDEVPRANNEFVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 492 A; 335 C; 353 G; 347 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc agttcaccat        60
     caaaatacca gcgacatgag caaattcctc aagcttaagg gcaaatggaa caaaacgtta       120
     atcacgcgag atgtgttggt gctttgtgga gttctcggag gtggattgtg gatggttatt       180
     cagcacctac ggtcaaagat ttccgaaccc gtaacccatg aagcgaaagg caaaaggcaa       240
     agacagaaac taaagtttcg caatgcccga gacaacaaga tgggtagaga agtatacgga       300
     gatgatgata ccatagagca tttctttggt gatgcctaca caaagaaagg gaagagcaag       360
     ggcagaacac gtggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagcgac attggatgac       480
     aacccgttca cagacatcac ccttgtgcaa gagcactttg gtaacataag aatgaacttg       540
     ctcgaggagg atgagctgga ctcaaatgaa atacgtttga ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctc       660
     aaagtgtgtg atcttcatgc aaccattgct ggattcccag agcgagaaaa cgagctgagg       720
     cagactggaa aggctcagcc cattagcata gacgaagtgc caagagctaa taatgaattc       780
     gttccagtgg accacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gttggtttcg gaccactcat attaacgaat cgacacctct ttgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca tggtgagttc gtgattaaaa acacaactca gctacatttg      1020
     ctaccgattc cagacagaga tctcctgcta atccggttac caaaggacat cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aagggtgagc gaatctgcat ggtaggctcc      1140
     aacttccaaa ccaagagcat aacgagtgta gtctctgaga ctagcacaat aatgccagtt      1200
     gaaaacagtc agttttggaa acactggatt agtacgaaag acggccaatg cggaagtcca      1260
     atggtgagca cgaaagacgg gaaaatactt ggattacaca gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gactttgccg agaagtatct tcataccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tataacacta gtgccatcag ctggggctct      1440
     ttgaatatac aagcatcgca accgtcgggt ttgttcaaag taagcaaact aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//