ID   AB179949; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179949;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHK55.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 2aca5ee9c00d7f5b3f1e48112e991621.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHK55"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6H0"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6H0"
FT                   /protein_id="BAD20363.1"
FT                   /translation="TDGISRHFMSDYGALEAVHHQNTSDMSKFLNLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFSNIRMNLLGEDELDPNEIRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPININEVPRANKELIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSHFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 491 A; 338 C; 356 G; 342 T; 0 other;
     accgatggaa tatctcggca tttcatgagt gattatggag ctttagaggc agttcaccat        60
     caaaacacca gcgacatgag caaattcctc aatcttaagg gcaaatggaa caaaacgcta       120
     atcacgcgag atgtgttggt gctttgtggt gttcttggcg gtggattgtg gatggttatt       180
     cagcacctgc ggtcaaagat ttccgaaccc gtaacccacg aagcgaaagg taagaggcaa       240
     agacagaaac taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga       300
     gatgatgaca ccatagagca tttctttggt gatgcctaca caaagaaagg gaagagcaag       360
     ggtaggacac gtggtctcgg acacaaaaac aggaagttca tcaacatgta tgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagcgac gttggatgac       480
     aacccgctca cagacatcac ccttgtgcaa gagcacttca gtaacataag aatgaactta       540
     ctcggggagg atgagctgga tccaaatgag atacgtatga ataagacaat tcaggcctac       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca catacctctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagaaaa cgaactgagg       720
     cagactggaa aggctcagcc cattaacata aacgaagtgc caagagctaa taaagaactt       780
     atcccagtgg accacgagag taactccatg ttcagagggt tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggttttg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca tggtgagttc gtgatcaaaa acacaactca gctacacttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccgcccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggtgaaa gaatctgcat ggtggggtcc      1140
     aatttccaaa ctaagagcat aacgagtata gtctctgaga ctagtacaat aatgccagtg      1200
     gaaaacagtc atttttggaa acactggatt agtacgaaag acggccaatg cggaagtccg      1260
     atggtgagca cgaaagacgg gaaaatactc ggattacaca gcctagcgaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgccg agaagtatct tcacaccatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tataatacta gtgccatcag ttggggctct      1440
     ttgaacatac aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac      1500
     ctcgacagca cggcagtcta cgcacaa                                          1527
//