ID   AB179944; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB179944;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHH29.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 41ee8650589391d8fc55614bf5f56ed0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHHH29"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6H5"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6H5"
FT                   /protein_id="BAD20358.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDSKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQEHFGNIRMNLLGEDELDPNETRMNKTIQAYYMNNKTGKALKVDLTPHTLLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANKELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1..63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64..222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223..798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799..>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 486 A; 337 C; 360 G; 344 T; 0 other;
     actgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc agttcaccat        60
     caaaacacca gtgacatgag caaattcctt aagcttaagg gcaaatggaa caaaacgcta       120
     attacgcgag atgtgttggt gctttgtgga gttcttggag gtggattgtg gatggttatt       180
     cagcacctgc ggtcaaagat ttccgaaccc gtaacccacg aagcgaaagg caagaggcaa       240
     agacagaaat taaagtttcg caatgctcga gacagcaaga tgggtagaga agtgtacgga       300
     gacgatgata ccatagagca tttctttggt gatgcctaca caaagaaagg gaagagcaag       360
     ggcaggacac gtggtatcgg acacaaaaat aggaagttca tcaacatgta cgggtttgat       420
     cctgaagatt tctctgcagt tcgtttcgtg gatccactca caggagctac gctggatgac       480
     aatccgttca cagacatcac ccttgtgcaa gagcacttcg gtaacataag aatgaacttg       540
     ctcggggagg atgagctgga tccaaatgaa acacgtatga ataagactat tcaggcctat       600
     tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacgccaca cacacttctc       660
     aaggtgtgtg atcttcacgc aaccattgct ggattcccag agcgagagaa cgaactgagg       720
     cagactggaa aggctcagcc cattaacata gacgaagtgc caagagctaa taaagaactc       780
     gtcccagtgg accacgagag taactccatg ttcagagggc tgcgtgacta caacccaata       840
     tcaaacaaca tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga       900
     gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa taacggtgaa       960
     ctcgtaataa aatcacgaca tggtgagttc gtgatcaaaa acacaactca gctacacttg      1020
     ctaccgattc cagacagaga tcttctgcta atccggttac caaaggacgt cccacccttt      1080
     ccacagaaat tgggtttcag gcaacctgag aaaggcgagc gaatttgcat ggtggggtcc      1140
     aatttccaaa ccaaaagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg      1200
     gaaaacagtc agttttggaa acactggatt agcactaaag acggccaatg cggaagtcca      1260
     atggttagca cgaaagacgg gaaaatactc ggattacaca gcctagcaaa cttccagaac      1320
     tccatcaatt actttgctgc tttcccagat gattttgccg agaagtatct tcatactatt      1380
     gaagcacacg agtgggtcaa gcattggaaa tataacacta gtgccatcag ttggggctct      1440
     ttgaacatac aagcatcgca accgtcaggc ttgttcaaag tgagcaagct aatctcagac      1500
     ctcgacagca cggcagttta cgcacaa                                          1527
//