ID   AB179935; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179935;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: OD11J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 81826a02f1cd38cca7d60d46df627289.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="OD11J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6I4"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6I4"
FT                   /protein_id="BAD20349.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPPVPLRSTTATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLRRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGISIGGGLSASAIEVEEVRTKWSLHKTPSMKRKTVHRRCKMND
FT                   RGIDMLVRSLIKIFKAKSANIEFIGRKPIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNKKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 381 A; 250 C; 310 G; 239 T; 0 other;
     gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt caaatctttc        60
     atcgttttca aagcaaccaa caacaacgca agcaatggca gcagttacat ttgcaaccgc       120
     aatcactaac accaccgcaa gcagatcagc atccaccgga atggtacagt ttgggaactt       180
     cccaccagtg ccattgcgat ccaccaccgc caccacagtc gccactccag tggcgcagcc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accgaatgcc gtgttgagga tgcatgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggcc agtttgagga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcaacaacc       600
     aattatacta aagtgggagc ccaaatcgag cggaatctca attggaggag ggctctctgc       660
     gagcgcgatt gaagtagaag aggttcgcac aaagtggtcg ttgcataaaa caccatcaat       720
     gaagaggaag acggtgcaca gaagatgcaa gatgaatgat cgaggaattg acatgttagt       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca ttgggaggaa       840
     gcccattaaa gtggattttg taaagaaaga gcaaacgaaa tttgccagag tgcaagtagt       900
     gcatttgctc ggaaagcggg cacaacgcga cctgttgact ggtgcagaag aaaaccactt       960
     cattgacacc ctaagcacat actcaggaaa taagaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttattagaaa cggcattttg actcagaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgaggaga acatgaaggg aagttgtatg acgccagggt      1140
     taaggtcaca aaggtgatga gccataaaat catacactat                            1180
//