ID   AB179932; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179932;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: SD3J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 3dd43608c467f659690646833bba1ce1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SD3J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6I7"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6I7"
FT                   /protein_id="BAD20346.1"
FT                   /translation="MAAVTFATAITNTTASKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGVGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARIQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 384 A; 255 C; 306 G; 235 T; 0 other;
     gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt caaatctttc        60
     atcgttttca aagcaaccaa caacaacgca agcaatggca gcagttacat tcgcaaccgc       120
     aatcactaac accaccgcaa gcaaaccagc actcaccgga atggtacagt ttgggaattt       180
     cccaccagtg ccattgcgat ccaccaccgt caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtagtcaaga gtggagtagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accaaacgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtttgaaga gaagctcata       480
     tggaattgct gagaacgaga aagttgtgat gacaactcgt ggcgtcagca agatagtgcc       540
     caggagttca agggcaatga agcaaaagcg cgcaagggaa aggcgtagag cgcaacagcc       600
     aatcatacta aagtgggagc ctaaattgag cgggatctca attggaggag ggctctccgc       660
     gagcgcgatt gaagtggaag aagtccgcac aaagtggccg cttcacaaga caccgtcaat       720
     gaagaggaag acggtgcaca gaagatgtaa gatgaatgat cagggaattg acatgttaat       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa       840
     gtccattaaa gtggatttcg taaagaaaga gcaaacgaag tttgccagaa tacaagtagt       900
     gcatttgctc ggaaagcgag cacaacgcga cctgttgact ggtgcagaag agaaccactt       960
     cattgacacc ctaagcacct actcaggaaa taggaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttatcagaaa cggcattcta actcagaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgagggga acatgaaggg aagttgtatg acgccagagt      1140
     taaggtcaca aaggtgatga gccacaaaat catacactat                            1180
//