ID   AB179931; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179931;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: STD8J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 336dff53aef05b9b817e70f958b5f093.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="STD8J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6I8"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6I8"
FT                   /protein_id="BAD20345.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPPVPLRSTTATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RIAQQPIILKWEPKSSGISIGGGLSASATEVEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 380 A; 254 C; 310 G; 236 T; 0 other;
     gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt caaatctttc        60
     atcgttttca aagcaatcaa caacaacgca agcaatggca gcagttacat ttgcaaccgc       120
     aatcactaac accaccgcaa gcagatcagc atccaccgga atggtacagt ttgggaactt       180
     cccaccagtg ccattgcgat ccaccaccgc caccacagtc gccactccag tggcgcagcc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggcc agtttgaaga gaagctcgta       480
     tggaattgcg gagaacgaga aagttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtatag cgcagcaacc       600
     aattatacta aagtgggagc ccaaatcgag cggaatctcg atcggaggag ggctttctgc       660
     gagcgcgact gaagtagaag aagttcgcac aaagtggccg ttgcataaaa caccatcaat       720
     gaagaggaag acggtgcaca gaagatgcaa gatgaatgat caaggaattg acatgttaat       780
     gcgttctttg attaaaatct tcaaggcgaa gagtgcgaac attgagttca ttgggaggaa       840
     gtccattaaa gtggattttg taaagaaaga gcaaacgaag tttgccagag tgcaagtagt       900
     gcatttgctc ggaaagcggg cacaacgcga cctgttgact ggtgcagaag aaaaccactt       960
     cattgacacc ctaagcacct actcaggaaa taggaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttatcagaaa cggcattttg actcagaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgagggga acatgaaggg aagttgtatg acgccagagt      1140
     taaggtcaca aaggtgatga gccataaaat catacactat                            1180
//