ID   AB179930; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179930;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ST19J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; b6eb5f08cfe481516c607a4e59a5bd47.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ST19J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6I9"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6I9"
FT                   /protein_id="BAD20344.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPMPLRSTTVITAATS
FT                   VAQPKLHTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSPYGIAENEKVVMTTCGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICKMND
FT                   QGVDMLIRSLVKIFKTKSANIEYIGKKSVKVDFIRKGRTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNEIPTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 260 C; 299 G; 232 T; 0 other;
     ggtaaaagca aacacaaatc tttcgaagca ctcaagcaat caaagattct taaatctttc        60
     atcgttacta aagcaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccatcacca ataaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat ccaccaccgt catcacagcc gccacttcag tggcgcaacc       240
     taaactgcac acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg       300
     ttcttttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag atcgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtctgaaga gaagtccgta       480
     tggaattgct gagaacgaga aagttgtaat gacaacttgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc       600
     aattatacta aaatgggagc ctaaattgag cgggatctca atcggaggag ggctctctgc       660
     gagcgcgatc gaagcagaag aggttcgcac aaagtggccg cttcacaaaa caccgtcaat       720
     gaagaagagg acggtgcaca gaatatgcaa gatgaacgac caaggagttg acatgttgat       780
     acgatccttg gttaagattt tcaagactaa gagcgccaac attgagtaca tcggaaagaa       840
     gtcggttaag gtcgatttca tcagaaaagg acggacgaaa ttcgcaagaa ttcaagtagc       900
     acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag aaaaccattt       960
     cattgacatt ctcagcgggt actcaggtaa caaaacaacc ataaatccag gagtggtctg      1020
     tgcaggttgg agtggcatag tcgttagaaa tgaaattcca acccagaaac gaagcagaag      1080
     tccatcagag gcctttgtaa ttagaggtga gcacgaaggc aagttgtacg atgccaggat      1140
     caaagtcacg aggacaatga gccacaagat tgtgcacttt                            1180
//