ID   AB179928; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179928;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   23-AUG-2004 (Rel. 80, Last updated, Version 3)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL4.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 32fc5f81a66c2f318686db7ccf400328.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL4"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6J1"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6J1"
FT                   /protein_id="BAD20342.1"
FT                   /translation="MAAVTFASAITNATTNKPALTEMVQFGNFPPMPLRSTTVTTVATS
FT                   VAQSKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSTISIGRRPSANMIEAEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKPIKVDFVKKEQTKFARITVVHLLRKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 255 C; 294 G; 240 T; 0 other;
     gattaaagca aacacaaatc tttcaaagca ctcaagcaat caaagatttt taaatctttc        60
     atcgttacca aagcaatcac caacaacgaa tcaaatggca gcagttacat tcgcgtcagc       120
     tatcaccaac gccaccacca acaaaccagc actcaccgaa atggtacagt ttgggaattt       180
     cccaccaatg ccattgcgat ccaccaccgt caccacagtc gccacttcag tggcgcaatc       240
     caaactgtac acagtgcagt ttggaagcct tgacccagta gttgttaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accaaatgcc gtgttaagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aggttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg tgcaagagaa aggcgcaggg cacaacaacc       600
     aattgtgctg aaatgggagc ccaagttgag cacaatctca attggaagaa gaccctccgc       660
     aaacatgatt gaggcagaag aggttcgcac gaagtggccg ttgcataaaa caccatcaat       720
     gaagaggaag acggtgcaca gaagatgcaa gatgaacgat caaggaattg atatgttaat       780
     gcgttctttg atcaaaatct ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa       840
     gccgattaaa gtggatttcg taaagaaaga gcaaacgaag ttcgccagaa ttacagtagt       900
     gcatttgctc cggaagcggg cacaacgtga cctgttgact ggtgcagaag agaaccactt       960
     cattgacacc ctaagcacct actcaggaaa taggaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttatcagaaa cggcattttg actcaaaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgaggaga acatgaaggc aagttgtatg acgccagggt      1140
     taaggtcaca aaggtgatga gccacaaaat catacactat                            1180
//