ID   AB179927; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179927;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 6c84330cac768a3031543f057f9578de.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL3"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6J2"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6J2"
FT                   /protein_id="BAD20341.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPMPLRSTTITTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPYVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGISKIVPRNSRAMKHKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRMCRMND
FT                   QGVGMLTRSLVKIFKTKSANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSEYSGNKITINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 395 A; 256 C; 291 G; 238 T; 0 other;
     gattaaagca aacacaaatt tttcaaagca ttcaagcaac cgaagatttc taaatctttc        60
     atcgttatca aagcaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccatcacca ataaaccagc actcaccgga atggtacagt ttgggagctt       180
     cccaccaatg ccattgcgat ccaccaccat caccacagtc gccacttcag tggcacaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc ttacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag atcgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtttgaaaa gaagctcgta       480
     tggaatcgct gaaaacgaga aagttgtaat gacaactcgt ggcatcagca agatagtgcc       540
     cagaaattca agggcgatga agcacaagcg cgcaagggaa aggcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaattgag tgggatctca atcggaggag ggctctccgc       660
     gagcgcaatc gaagcagaag aggttcgcac aaagtggcca cttcataaga caccgtcaat       720
     gaagaagagg acggtgcaca gaatgtgcag gatgaatgac caaggagttg gcatgttgac       780
     acgatccctg gttaagattt tcaagactaa gagtgccaac attgagtaca tcggaaagaa       840
     gtcgattaag atcgatttca tcagaaaaga acgaacgaaa ttcgcaagaa ttcaagtagc       900
     acacttactc gggaagagag cacagcgtga cttatcaact ggaatggaag aaaaccattt       960
     tattgatatt cttagcgagt actcaggtaa caaaataacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag tcgttagaaa tggaattcta acccagaaac gaagcagaag      1080
     tccatcagag gcctttgtaa ttagaggtga gcacgaaggc aagttgtacg atgccaggat      1140
     caaagtcacg aggacaatga gtcacaagat cgtgcacttt                            1180
//