ID   AB179921; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179921;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HJ1S.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 4148e0aee1d4a81ab92b15a05c6e4444.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HJ1S"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6J8"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6J8"
FT                   /protein_id="BAD20335.1"
FT                   /translation="MAAVTFASAITNAITNEPASTGMVQFGSFPPVPLQSTTVTTVATS
FT                   VAQPKLYTVQFGSLEPVVVKGGTGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLNWEASLKRSSYGIAENEKVIMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRALQPIILKWEPKLSAISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRTVHRTCKMND
FT                   QGIDMLTRSLVKIFKAKSANIEYIGKKLIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSEYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 254 C; 298 G; 239 T; 0 other;
     gattaaagca aacacaaatc tttcaaagca tccaagcaat caaagattct caagtctttc        60
     atcgttatca aagcaaccac caacagcaaa tcaaatggca gcagttacat ttgcatcagc       120
     tatcactaac gccatcacca acgaaccagc atccaccgga atggtacagt ttgggagttt       180
     cccaccagtg ccattgcaat ccaccaccgt caccacagtc gccacttcag tggcgcagcc       240
     taaactgtac acagtgcagt ttggaagtct tgaaccagta gtcgtcaagg gtggaacagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag atcgaatgcc gtgttgagaa tgcacgagga       420
     agcaaataag gagagagcac tctttttgaa ctgggaggct agtttgaaga gaagttcgta       480
     cggaatcgct gaaaacgaga aggttataat gacaactcgt ggcgtgagca agatagtgcc       540
     caggagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgctacagcc       600
     aattatacta aagtgggagc ctaaattgag cgcgatctca attggaggag gactctccgc       660
     gagcgcgatc gaagtagagg aagtccgcac aaagtggccg cttcataaga caccgtcaat       720
     gaagaagagg acggtacaca gaacatgtaa gatgaacgac caaggaattg acatgttgac       780
     acgatccctg gttaagattt tcaaggccaa gagtgccaac attgagtaca tcgggaagaa       840
     attgatcaag gttgatttca tcagaaaaga gcggacgaaa ttcgcaagaa tccaagtagc       900
     acacttactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag aaaaccattt       960
     tattgacatt ctcagcgagt actcaggcaa taaaacaact ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag tcgttagaaa tggaattcta acccagaaac gaagcaggag      1080
     tccatcagag gcctttgtaa ttagaggtga gcacgaaggc aagttgtatg atgccaggat      1140
     taaagtcacg aggacaatga gtcacaagat tatgcacttt                            1180
//