ID   AB179920; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179920;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HBI2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 5f84d8436a32177a6108705793bf5ccc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HBI2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6J9"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6J9"
FT                   /protein_id="BAD20334.1"
FT                   /translation="MAAVTFASAITNAITNKPAPTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGVEENHFIDILSRYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 390 A; 257 C; 298 G; 235 T; 0 other;
     gataaaagca aacacaaatc tttcaaagca ttcaagcaat caaagattct caaatctttc        60
     atcgttatca aagcaatcac caacagcaaa ccaaatggca gcagttacat ttgcatcagc       120
     tatcactaac gccatcacca ataaaccagc acccaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat ccaccaccgt caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gttgtcaagg gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accaaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaagct agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     caggagttca agggcaatga agcaaaagcg cgcaagggaa aggcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaatcgag cgggatctca atcggaggag ggctctctgc       660
     aagcgcgatt gaagttgaag aggttcgcac aaagtggccg ctccacaaga caccgtcaat       720
     gaagaagagg acggtgcaca ggatatgcag gatgaacgac caaggagttg acatgttgac       780
     acgatccctg gttaagattt tcaagactaa gagtgccaac attgagtaca tcggaaagaa       840
     gtcgatcaag gtcgatttca tcagaaaaga acggacgaaa ttcgcaagaa ttcaagtagc       900
     acacttactc gggaagagag cacagcgcga cttatcaact ggagtggaag aaaaccattt       960
     cattgacatt ctcagcaggt attcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag tcgttagaaa tggaattcta acccagaaac gaagcagaag      1080
     tccatcagag gcctttgtaa ttagaggtga gcatgaaggc aagttgtacg atgccaggat      1140
     caaagttacg aggacaatga gtcacaagat tgtgcacttt                            1180
//