ID   AB179919; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179919;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZJ27.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 63f00845ab7c2dc34ba42263cc13df72.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZJ27"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6K0"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6K0"
FT                   /protein_id="BAD20333.1"
FT                   /translation="MAAVTFASAITNAITNKPAPTGMVQFGSFPPMPLRFTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEIRTKWPLHKTPSMKKRMVHRTCKMNN
FT                   QGIDMLIRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSEYSGNKTTINPGVVCAGWSGIVVRNGILAQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 392 A; 257 C; 296 G; 235 T; 0 other;
     gataaaagca aacacaaatc tttcgaagca tccaagcaat caaagattct caaatctttc        60
     agcgtcatca aagcaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccatcacca acaaaccagc acccaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat tcaccaccgt caccacagtc gccacctcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gttgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag atcaaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggcc agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtaat gacaactcgt ggcgttagca agatagtgcc       540
     caggagttca agggcaatga agcaaaagcg cgcaagggaa aggcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaattgag cgggatctca atcggaggag ggctctctgc       660
     gagcgcgatc gaagcagaag agattcgcac aaagtggccg cttcataaga caccatcaat       720
     gaagaagagg atggtgcaca gaacatgcaa gatgaacaac caaggaattg acatgttgat       780
     acgatccctg gttaagattt tcaagactaa gagtgccaat attgaatata tcgggaagaa       840
     atcaatcaag gttgatttca tcagaaaaga gcagacgaaa tttgcaagaa tccaagtagc       900
     acacttactc gggaagcgag cacgtcgcga cttgtcaact ggaatggaag aaaaccattt       960
     tattgatatt ctcagcgagt actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     tgcaggttgg agtggcatag ttgttagaaa tggaattcta gcccagagac gaagcaggag      1080
     cccatcagag gcctttgtaa ttagaggtga gcatgaaggc aagttgtacg acgccaggat      1140
     caaagtcacg aggacaatga gtcacaagat tgtgcacttt                            1180
//