ID   AB179918; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179918;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZJ26.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 8fbc6d11a30bc8e311832a8622247cb2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZJ26"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6K1"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6K1"
FT                   /protein_id="BAD20332.1"
FT                   /translation="MAAVTFATAITNTTASKSASTGMVQFGNFPSVPLRSTVATIATTP
FT                   VVQPKLYTVQFGSLDPIVVKGEAGSSAKATCQQPSGEINASLKEAAALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETSLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSAISIGGGPSANMIEAEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARIQVEHLLGKRAQRDLL
FT                   TGAEENCFIDTLSTYSGNRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 257 C; 297 G; 237 T; 0 other;
     gattaaagca aacacaaatc tctcgaagcg ttcaagcaac caaagatttt caaatctttc        60
     atcgttttca aagcaaccaa caacaacgca agcaatggca gcagttacat ttgcaaccgc       120
     aatcactaac accaccgcaa gcaaatcagc atccaccggg atggtacaat ttgggaattt       180
     cccatcagtg ccgttgcgat caaccgtcgc taccatagcc accaccccag tggtacaacc       240
     caagctgtac acagtacagt tcggaagcct tgacccgatt gtcgtcaagg gtgaagcagg       300
     gtcctctgct aaggcaacct gccagcagcc tagcggtgaa ataaacgcta gcctcaagga       360
     agccgcagct ttggaggttg caaaacccaa accgaatgcc gtgttaagga tgcacgagga       420
     aatgaacaag gagagagcac tcttcttaga ctgggaaacc agtttaacaa ggcgctcata       480
     tggcattgct gacaacgaga aggtcatcat gacagctcgt ggtgttagca aaatagtgct       540
     taggagctca agggcgatga aacaaaagcg cgcaagagaa aggcgcaggg cacaacaacc       600
     aattgtgctg aaatgggagc ccaagttgag cgcaatctca attggaggag gaccctccgc       660
     aaacatgatt gaggcagaag aggttcgcac gaagtggccg ttacataaaa caccatcaat       720
     gaagaggaag acggtgcaca gaagatgcaa gatgaatgat caaggaatcg acatgttaat       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa       840
     gtccattaaa gtggattttg taaagaaaga gcaaacgaag tttgccagaa tacaagtaga       900
     gcatttgctc gggaagcggg cacaacgcga cctgttgact ggtgcagaag agaattgctt       960
     cattgacacc ctaagcacct actcaggaaa taggaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttatcagaaa cggcattttg actcagaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgaggaga acatgaaggg aagttgtatg acgccagagt      1140
     taaggtcaca aaggtgatga gccataaaat catacactat                            1180
//