ID   AB179909; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179909;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK56.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; bc5ee818a85ea369f8a6fe520e5a30b6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHYK56"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L0"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L0"
FT                   /protein_id="BAD20323.1"
FT                   /translation="MAAVTFASAITNTITNKPALIGMVQFGSFPPVPLRSTTVTTVATS
FT                   VAQPKLHTVQFGSLDPVVIKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKSRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSIKKRMVQRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKRSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 384 A; 259 C; 304 G; 233 T; 0 other;
     gattaaagca aacacaaatc tttcaaagca tccaagcaat caaagattct taaatctttc        60
     atcgttatca aagcaaccac caacagcaaa tcaaatggca gcagttacat ttgcatcagc       120
     tatcaccaac accatcacca acaaaccagc actcatcgga atggtacagt tcgggagttt       180
     cccaccagtg ccattgcgat ccaccaccgt caccacagtc gccacttcag tggcgcagcc       240
     taaattgcac acagtgcagt ttggaagtct cgacccagta gtcatcaagg gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaatctag atcgaatgcc gtgttgagaa tgcacgagga       420
     agcaaataag gagagagcgc tcttcttgga ctgggaggcg agtttgaaga gaagctcgta       480
     tgggattgct gagaacgaga aggttgtcat gacaactcgt ggcgtcagca agatagtgcc       540
     caggagttca agggcaatga agcaaaagcg tgcaagggag aggcgtagag cgcagcaacc       600
     aatcatacta aagtgggagc ccaaattgag cgggatttca attggaggag ggctctctgc       660
     gagcgcgatt gaggtagaag aagtccgcac aaagtggccg cttcataaga caccgtcaat       720
     aaagaagagg atggtgcaaa ggacatgtaa gatgaacgac caaggaattg acatgttgac       780
     acggtccctg gtcaagattt tcaagactaa gagtgccaac attgagtaca tcgggaagag       840
     atcgatcaag gttgatttca tcaggaaaga gcgaacgaaa ttcgcaagaa tccaagtagc       900
     acacctactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag aaaaccattt       960
     tattgacatt ctcagcgggt actcaggcaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag ttgttagaaa tggaattcta acccagaaac gaagcaggag      1080
     cccatcagaa gcctttgtaa ttagaggcga gcacgaaggc aagttgtatg acgccaggat      1140
     caaagtcacg agaacaatga gtcacaaaat tgtgcacttt                            1180
//