ID   AB179908; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179908;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK20.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 700abc545efbdee74efd398d09eaad62.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHYK20"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L1"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L1"
FT                   /protein_id="BAD20322.1"
FT                   /translation="MAAVTFASAITNTITDKPALTGMVQFGSFPPVPLRSTTVTTVATS
FT                   VAQPKLHTVQFGSLDPVVIKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKSRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIMLKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRMMHRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKLIKVDFIRKERTKFARIQVAHLLGRRAQRDLA
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 390 A; 258 C; 298 G; 234 T; 0 other;
     gattaaagca aacacaaatc tttcaaagca tccaagcaat caaagattct caaatctttc        60
     atcgttatca aagcaaccac caacagcaaa tcaaatggca gcagttacat ttgcatcagc       120
     tatcaccaac accatcaccg acaaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccagta ccattgcgat ccaccaccgt caccacagtc gccacttcag tggcgcagcc       240
     taaattgcac acagtgcagt ttggaagtct tgacccagta gtcatcaagg gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaatctag atcaaacgct gtgttgagaa tgcacgaaga       420
     agcaaacaag gagagagcac tctttttgga ttgggaggcg agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aggttgtcat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc       600
     aattatgcta aagtgggagc ccaaattgag cgggatctca attggaggag ggctctccgc       660
     gagcgcaatt gaagtggaag aagtccgcac aaagtggcca cttcacaaaa caccgtcaat       720
     gaagaagagg atgatgcaca gaacatgtaa gatgaacgac caaggaattg acatgttgac       780
     acggtccctg gtcaagattt tcaagactaa gagtgccaac attgagtaca tcgggaagaa       840
     attgatcaag gttgatttca tcagaaaaga gcggacgaaa ttcgcaagaa tccaagtagc       900
     acacttactc gggaggcgag cacagcgcga cttggcaact ggaatggaag aaaaccattt       960
     tattgacatt ctcagcgggt actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag ttgttagaaa tggaattcta acccaaaaac gaagcaggag      1080
     cccatcagag gcctttgtaa ttagaggtga gcacgaaggc aagttgtatg acgccaggat      1140
     caaagtcacg agaacaatga gtcataagat tgtgcacttc                            1180
//