ID   AB179906; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179906;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHSE1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; d43b9669822dbaab99e83c12842f0405.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHSE1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L3"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L3"
FT                   /protein_id="BAD20320.1"
FT                   /translation="MAAVTFASAITNAITNKPASTGMVQFGSLPPVPLRSTTVTTVVTS
FT                   MAQPKLYTVQFGSLDPVVVKGGTGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVIMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKKTVHRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENQFIDILSEYSGNKTTINPGLVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 394 A; 260 C; 294 G; 232 T; 0 other;
     gattaaagca aacacaaatc tttcaaagca tccaagcaat caaagattct caaatctttc        60
     atcgttatca aagcaaccac caacagcaaa ccaaatggca gcagttacat ttgcatcagc       120
     tatcactaac gccatcacca acaaaccagc atccaccgga atggtacagt ttgggagtct       180
     cccaccagtg ccattgcgat ccactaccgt caccacagtc gtcacttcaa tggcgcagcc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gttgtcaagg gtggaacagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag atcgaatgcc gtgttgagaa tgcacgagga       420
     agcaaataag gagagagcac tctttttgga ctgggaggct agtttgaaga gaagttcgta       480
     cggaatcgcc gaaaacgaga aagttataat gacaactcgt ggcgtgagca agatagtgcc       540
     caggagttca agggcaatga agcaaaagcg cgcaagggag agacgtagag cacaacagcc       600
     aattatacta aagtgggagc ccaaattgag cgggatctca attggaggag ggctctccgc       660
     gagcgcgatc gaagtagagg aagtccgcac aaagtggccg cttcacaaga caccgtcaat       720
     gaagaagaag acggtgcaca gaacatgtaa gatgaacgac caaggaattg acatgttgac       780
     acgatccctg gttaagattt tcaagaccaa gagtgccaac attgagtaca tcgggaagaa       840
     atcgatcaag gttgatttca tcaggaaaga gcggacgaaa ttcgcaagaa tccaagtagc       900
     acacttactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag aaaaccagtt       960
     tattgacatt ctcagcgagt actcaggcaa taaaacaact ataaatccag gattagtttg      1020
     cgcaggttgg agtggcatag tcgttagaaa tggaattcta acccagaaac gaagcagaag      1080
     tccatcagag gcctttgtaa ttagaggtga gcacgaaggc aagttgtatg acgccaggat      1140
     caaagtcacg agaacaatga gtcacaaaat tgtgcacttt                            1180
//