ID   AB179905; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179905;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHSC2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 847db3c6b8381aea6fccb411d8aed9ad.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHSC2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L4"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L4"
FT                   /protein_id="BAD20319.1"
FT                   /translation="MAAVTFASAITNAITNKPALTGMVQFGSFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGTSIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKTKNANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSAYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFIIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 394 A; 259 C; 296 G; 231 T; 0 other;
     gattaaagca aacacaaatc tttcaaagca ttcaagcaat caaagattct caaatctttc        60
     atcgatatca aagcaaacac caacaacaaa tcaaatggca gcagttacgt ttgcatcagc       120
     tatcaccaac gccatcacca acaaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccagtg ccattgcgat ccaccaccgt caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct cgacccagta gttgtcaagg gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaagcctag accaaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ttgggaggct agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtaat gacaactcgt ggcgtgagca agatagtgcc       540
     cagaagctca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaattgag cgggacctca atcggaggag ggctctctgc       660
     gagcgcgatt gaagcagaag aggttcgcac aaagtggccg cttcataaga caccgtcaat       720
     gaagaagagg acggtgcaca gaatatgcag gatgaatgac caaggagttg acatgctgac       780
     acgatccctg gttaagattt tcaagactaa gaatgccaac attgagtaca tcggaaagaa       840
     gtcgattaag atcgatttca tcagaaaaga acgaacgaaa ttcgcaagaa ttcaagtagc       900
     acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag aaaaccattt       960
     tattgacatt ctcagcgcgt actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag tcgttagaaa tggaatttta acccagaaac gaagcagaag      1080
     cccatcagag gcctttataa tcagaggtga gcacgaaggc aaattgtacg atgccaggat      1140
     caaagtcacg aggacaatga gtcacaagat tgtgcacttt                            1180
//