ID   AB179902; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179902;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 223eb912f7b6a368eb5a9930155917bf.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN3"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L7"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L7"
FT                   /protein_id="BAD20316.1"
FT                   /translation="MAAVTFASAITNAIINKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRAREK
FT                   RRAQQPIILKWEPKLSGISIGGGLSANAIEVEEDRTKWPLHKTPSMKKRIVHRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSEYSGNKTTINPGVVCAGWSGIVVRNEILAQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 256 C; 299 G; 234 T; 0 other;
     gataaaagca aacacaaatc tttcgaagca ttcaagcaat caaagatcct taaatctttc        60
     atcgttatca aagcaatcac caacagcaaa caaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccattatca ataaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat caaccaccgt caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaagg gtggagcagg       300
     gtcccttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaagcctag atcgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcgc tctttttgga ctgggaggct agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtgat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aagcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaattgag cgggatctca attggaggag ggctctccgc       660
     gaacgcgatc gaagtggaag aagaccgcac aaagtggccg cttcacaaga caccgtcaat       720
     gaagaagagg atagtgcaca gaacatgcaa gatgaacgac caaggaattg acatgttgac       780
     acgatccctg gttaagattt tcaagactaa gagtgccaac attgaataca tcgggaagaa       840
     atcgatcaag gttgatttca tcagaaaaga gcagacgaaa ttcgcaagaa tccaagtagc       900
     acacttactc gggaagcgag cacgtcgcga cttgtcaact ggaatggaag aaaatcattt       960
     tattgatatt ctcagcgagt actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag ttgttagaaa tgaaattcta gcccagagac gaagcagaag      1080
     cccatcagag gcctttgtaa ttaggggtga gcacgaaggc aagttgtacg atgccaggat      1140
     caaagtcacg aggacaatga gtcacaagat tatgcacttt                            1180
//