ID   AB179901; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179901;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; ff660a963c466b76f48c102b99e8839b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L8"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L8"
FT                   /protein_id="BAD20315.1"
FT                   /translation="MAAVTFASAITNAVINKPALTGMVQFGSFPPMPLRSTTITTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSEISIGGGLSASAIEVEEARTKWPLHKTPSMKKRMVHRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSEYSGNKTTINPGVVCAGWSGIVVRNGILAQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 254 C; 297 G; 238 T; 0 other;
     gataaaagca aacacaaatc tttcgaagca ttcaagcaat caaagattct taaatctttc        60
     atcgttatca aagcaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccgttatca ataaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat caaccaccat caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaagg gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaagcctag atcgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtttgaaga gaagctcgta       480
     tggaattgct gagaatgaga aagttgtgat gacaactcgt ggtgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cacagcaacc       600
     aattatacta aaatgggagc ccaaattgag cgagatctca attggaggag ggctctccgc       660
     gagcgcgatc gaagtggaag aagcccgcac aaagtggccg cttcacaaaa caccgtcaat       720
     gaagaagagg atggtgcaca gaacatgcaa gatgaacgac caaggaattg acatgttgac       780
     acgatccctg gttaagattt tcaagactaa gagtgccaac attgaataca tcgggaagaa       840
     atcgatcaag gttgatttca tcagaaaaga gcagacgaaa ttcgcaagaa tccaagtagc       900
     acacttactt gggaagcgag cacgtcgcga cttgtcaact ggaatggaag aaaaccattt       960
     tattgatatt ctcagcgagt actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag ttgttagaaa tggaattcta gcccagagac gaagcagaag      1080
     cccatcagag gcctttgtaa ttaggggtga acacgaaggc aagttgtacg atgccaggat      1140
     caaagtcacg aggacaatga gtcacaagat tatgcacttt                            1180
//