ID   AB179900; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179900;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHL14.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; cfb16eb1abeed5673f4377c5eb6747d8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHL14"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6L9"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6L9"
FT                   /protein_id="BAD20314.1"
FT                   /translation="MAAVTFATAITNTTANRSASTGMVQFGNFPPVPLRSTTTTTVATP
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVIMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKSSGVSIGGGLSASAIEAEEVRTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFTGRKSIKVNFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGVEENHFIDTLSTYSGNKKIINPGVVCAGWSGIVVRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 257 C; 301 G; 233 T; 0 other;
     gattacagca aacacaaatc tctcgaagca ttcaagcaaa caaagatttt caaatctttc        60
     atcgttttca aagcaaccaa caacaacgca agcaatggca gcagttacat ttgcaaccgc       120
     aatcactaac accaccgcaa acagatcagc atccaccgga atggtacagt ttgggaactt       180
     cccaccagtg ccattgcgat ccaccaccac caccacagtc gccactccag tagcgcaacc       240
     caaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggcc agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttataat gacaactcgt ggtgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaatcgag cggagtctca atcggaggag ggctttctgc       660
     gagcgcgatc gaagcagaag aagttcgcac aaagtggccg ttgcataaaa caccatcaat       720
     gaagaggaag acggtgcaca gaagatgcaa gatgaatgat caaggaattg acatgttaat       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca ctggaaggaa       840
     gtccattaaa gtgaattttg taaagaaaga gcaaacgaag tttgccagag tgcaagtagt       900
     gcatttgctc ggaaagcgag cacaacgcga cctgttgact ggtgtagaag aaaaccactt       960
     cattgacacc ctaagcacct actcaggaaa taagaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg tcgtcagaaa cggcattttg actcagaagc agagcagaag      1080
     tccctcgcaa gcctttgtga ttcgaggaga acatgaaggg aagttgtatg acgccagagt      1140
     taaggtcaca aaggtgatga gccataaaat catacactat                            1180
//