ID   AB179898; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179898;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHK55.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 02a251b33d38434ec515d69cb66f1ac7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHK55"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6M1"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6M1"
FT                   /protein_id="BAD20312.1"
FT                   /translation="MAAVTFASAITNTITNKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSHGIADNEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWETKLSGISIGGGLSASAIEVEEVRTKWPLHKTPPVKKRMVHRTCKMNS
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGVVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 390 A; 259 C; 298 G; 233 T; 0 other;
     gatagaagca aacacaaatc tttcgaagca tccaagcaat caaagattct taaatctttc        60
     atcgttatca aagcaattac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac accatcacca ataaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat caaccaccgt caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaagg gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag atcgaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtttaaaga gaagctcgca       480
     tggaattgct gataacgaga aagttgtgat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcaacaacc       600
     aattatacta aagtgggaga ccaaattgag cgggatctca attggagggg ggctctccgc       660
     gagcgcgatc gaagtagaag aagtccgcac aaagtggccg cttcacaaaa caccgccagt       720
     gaagaagagg atggtgcaca gaacatgcaa gatgaacagc caaggaattg acatgttgac       780
     acgatccctg gttaagattt tcaagactaa gagtgccaac attgaataca tcgggaagaa       840
     atcgatcaag gttgatttca tcagaaaaga gcagacgaaa ttcgcaagaa tccaagtagc       900
     acacttactc gggaagcgag cacgtcgcga cttgtcaact ggaatggaag aaaaccattt       960
     tattgatatt ctcagcgggt actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agcggcgtag tcgttagaaa tggaattcta acccaaaaac gaagcagaag      1080
     tccatcagag gcctttgtga ttagaggtga gcatgaaggc aagttgtacg atgccaggat      1140
     caaagtcacg aggacaatga gtcacaagat tgtgcacttt                            1180
//