ID   AB179896; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179896;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHK16.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 343e681949b17bc50585681a48bc295c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHK16"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6M3"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6M3"
FT                   /protein_id="BAD20310.1"
FT                   /translation="MAAVTFASAITNATTNKPALTGMVQFGSFPPMPLRSTTVTTVDTS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWETSLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEIEEVRTKWPLHKTPSMKRKTVHRKCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVEHLLGKRAQRDLS
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVVRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 257 C; 300 G; 232 T; 0 other;
     gataaaagca aacacaaacc tttcgaagca ttcaagcaat caaagattct caaatctttc        60
     atcgttatca aagcaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccaccacca acaaaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccaatg ccattgcgat ccactaccgt caccacagtc gacacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gttgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg caaaacctag atcaaacgcc gtgttgagga tgcacgagga       420
     agcaaataag gagagagcac tctttttgga ctgggagact agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaaa aagttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc       600
     aattatatta aagtgggagc ccaaattgag cgggatctca attggaggag ggctctccgc       660
     gagcgcgatc gaaatagaag aagttcgcac aaagtggccg cttcacaaga caccatcaat       720
     gaagaggaag acggtgcaca gaaaatgcaa gatgaacgat caaggaattg acatgctaat       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca tcggaaggaa       840
     gtccattaaa gtggatttcg taaagaaaga gcaaacgaag tttgccagag tacaggtaga       900
     acatttgctc ggaaagcggg cacaacgcga cctgtcgact ggtgcagaag agaaccactt       960
     cattgacacc ctaagcacct actcaggaaa taggaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttgtcagaaa cggcattttg actcagaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgaggaga acatgaaggg aagttgtatg acgccagggt      1140
     aaaggtcaca aaggtgatga gccacaaaat catacactac                            1180
//