ID   AB179895; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179895;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHZ3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 3e8a1ab9dfed4b361fdaa2b325f71f81.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHHZ3"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6M4"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6M4"
FT                   /protein_id="BAD20309.1"
FT                   /translation="MAAVTFASAITNAITNRPALTGMVQFGSFPPVLLRSTTVTTVATS
FT                   VAQPKLYTVQFGNLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRAREK
FT                   RRAQQPIILKWEPKLSAISIGGGLSASAIEAEEVRTKWPLHKTPSMKKRTVHRICEMND
FT                   QGIDMLTRSLVKIFKARSANIEYIGKKSIKIDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVIRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 259 C; 297 G; 233 T; 0 other;
     gataaaagca aacacaaatc tttcgaagca ttcaagcaat caaagattct caaatctttc        60
     atcgttacca aagcaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccaac gccatcacca acagaccagc actcaccgga atggtacagt ttgggagttt       180
     cccaccagtg ctattgcggt ccaccaccgt caccacagtc gccacttcag tggcgcaacc       240
     taaactgtac acagtgcagt ttggaaacct tgacccagta gttgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ctggaggttg cgaaacctag accaaatgcc gtgttgagga tgcacgagga       420
     agcaaacaag gagagagcac tctttttgga ctgggaggct agtttgaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aagcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaattgag cgcgatttca atcggaggag ggctctctgc       660
     gagcgcgatc gaagcagaag aggtccgcac aaagtggccg cttcataaga caccgtcaat       720
     gaagaagaga acggtgcaca gaatatgcga gatgaacgac caaggaattg acatgttgac       780
     acgatccctg gttaagattt tcaaggctag gagtgccaac attgagtaca tcggaaagaa       840
     gtcgattaag atcgatttca tcaggaaaga acggacgaaa ttcgcaagaa ttcaagtagc       900
     acacttactc gggaagagag cacagcgcga cttatcaact ggaatggaag aaaaccattt       960
     tattgacatt cttagcgggt actcaggcaa caaaacaacc ataaatccag gagtagtttg      1020
     tgcaggttgg agtggcatag tcattagaaa tggaattcta acccagaaac gaagcagaag      1080
     tccatcagag gcctttgtaa ttagaggtga gcacgaaggc aagttgtacg atgccaggat      1140
     caaagtcacg agaacaatga gtcacaagat tgtgcacttt                            1180
//