ID   AB179893; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179893;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHHH29.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 86a3ecf647dc9aabbcd8fcc7afd9425e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHHH29"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6M6"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6M6"
FT                   /protein_id="BAD20307.1"
FT                   /translation="MAAVTFASAITSAITNKPALTGMVQFGNFTPMPLRSTTVTTVATS
FT                   MAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRTVHRTCKMND
FT                   QGIDMLIRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSRYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 395 A; 259 C; 294 G; 232 T; 0 other;
     gataaaagca aacacaaatt tttcgaagca ttcaagcaat caaagattct taaatctttc        60
     atcgttatca aagtaatcac caacagcaaa ccaaatggca gcagttacat tcgcatcagc       120
     tatcaccagc gccatcacca acaaaccagc actcaccgga atggtacagt ttgggaattt       180
     cacaccaatg ccattgcgat ccaccaccgt caccacagtc gccacgtcaa tggcgcagcc       240
     taaactgtac acagtgcagt ttggaagcct tgacccagta gtcgtcaaga gtggagcagg       300
     gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta gcctcagtga       360
     agccgcagct ttggaggttg cgaaacctag accgaatgcc gtgttaagga tgcacgagga       420
     agcaaacaaa gagagagcac tctttttgga ctgggaagct agtttaaaga gaagctcgta       480
     tggaattgct gagaacgaga aagttgtaat gacaactcgt ggcgtcagca agatagtgcc       540
     cagaagttca agggcaatga agcaaaagcg cgcaagggag aggcgtagag cgcagcaacc       600
     aattatacta aagtgggagc ccaaattgag tgggatctca attggaggag ggctctccgc       660
     gagcgcaatc gaagtagaag aagtccgcac aaagtggccg cttcacaaga caccgtcaat       720
     gaagaagagg acggtgcaca gaacatgtaa gatgaacgac caaggaattg acatgttgat       780
     acgatccctg gttaagattt tcaagaccaa gagcgccaac attgagtaca tcgggaagaa       840
     atcgatcaag gttgatttca tcagaaaaga gcggacgaaa ttcgcaagaa tccaggttgc       900
     acacttactc gggaagcgag cacagcgcga cttgtcaact ggaatggaag aaaaccattt       960
     tattgacatt ctcagcagat actcaggtaa caaaacaacc ataaatccag gagtagtttg      1020
     cgcaggttgg agtggcatag ttgttagaaa cggaattcta actcagaaac gaagcaggag      1080
     cccatcagag gcctttgtaa ttagaggcga gcacgaaggc aagttgtatg acgccaggat      1140
     caaagtcacg agaacaatga gtcacaagat tgtgcacttt                            1180
//