ID   AB179892; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179892;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHBJ2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; 6b855c7056ba75b4c8f2e37d53d71fd5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHBJ2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6M7"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6M7"
FT                   /protein_id="BAD20306.1"
FT                   /translation="MAAVTFATAITNTTASRSTSTGMVQFGNFPPVPLRSTIATTVITP
FT                   VVQPKLYTVQFGSLEPIVVKGEAGSSAKATCQQPSGEINASLKEATALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETSLTRRSYGIADNEKVIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLRWEPKLSTISIGRGPSANMIEAEEVHTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRKIINPGVVCAGWSGIVVRNGILAQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 389 A; 257 C; 296 G; 238 T; 0 other;
     gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt caaatctttc        60
     atcgttttca aagcaaccaa caacaacgca agcaatggca gcagttacat ttgcaaccgc       120
     aatcacgaac accaccgcaa gcagatcaac atccaccgga atggtacaat ttgggaattt       180
     cccaccagtg ccgttgcgat ccaccatcgc taccacagtt atcaccccag tggtacaacc       240
     caagctgtac acagtacagt tcggaagcct tgaaccgatt gtcgtcaagg gtgaagcagg       300
     gtcctctgct aaggcaacct gccagcagcc tagcggtgaa ataaacgcta gcctcaagga       360
     agccacagct ttggaggttg caaaacccaa accgaatgcc gtgttaagga tgcacgagga       420
     aatgaacaag gagagagcac tcttcttaga ctgggaaacc agtttaacaa ggcgctcata       480
     tggcattgct gacaacgaga aggtcatcat gacagctcgt ggtgttagca aaatagtgct       540
     taggagctca agggcgatga aacaaaagcg cgcaagagaa aggcgcaggg cacaacaacc       600
     aattgtactg agatgggagc ccaagttgag cacaatctca atcggaagag gaccctccgc       660
     aaacatgatt gaggcagaag aggttcacac gaagtggccg ttgcataaaa caccatcaat       720
     gaagaggaag acggtgcaca ggagatgcaa gatgaatgat caaggaattg acatgttaat       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa       840
     gtccattaaa gtggattttg tgaagaaaga gcaaacgaag tttgccagag tacaagtagt       900
     gcatttgctc ggaaagcggg cacaacgcga cctgttgact ggtgcagagg agaaccactt       960
     cattgacacc ctaagcacct actcaggtaa taggaaaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttgtcagaaa tggcattttg gctcagaagc agagcagaag      1080
     tccttcgcaa gcctttgtga ttcgaggaga acatgaaggg aagttgtatg acgccagagt      1140
     taaggtcaca aaggtgatga gccataaaat catacactat                            1180
//