ID   AB179888; SV 1; linear; genomic RNA; STD; VRL; 1180 BP.
XX
AC   AB179888;
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CH6.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RX   DOI; 10.1099/vir.0.80124-0.
RX   PUBMED; 15302962.
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85(Pt 9):2683-2696(2004).
XX
DR   MD5; fad8adf54129697a58a15ac31e6fea08.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1180
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CH6"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   5'UTR           <1..94
FT   CDS             95..>1180
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q6L6N1"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q6L6N1"
FT                   /protein_id="BAD20302.1"
FT                   /translation="MAAVTFATAITNTTASRSASTGMVQFGNFPSVPLRSTVATTATTS
FT                   VVQPKLYTVQFGSLEPIVVKGKAGSSAKATCQQPSGEINASLKEAAALEVAKPKPNAVL
FT                   RMHEEMNKERALFLDWETSLTRRSYGIADNEKIIMTARGVSKIVLRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPKLSEISIGRGPSANMIEAEEVRTKWPLHKTPSIKKKTVHKRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGNRRIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVVRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     95..>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 395 A; 255 C; 292 G; 238 T; 0 other;
     gattaaagca aacacaaatc tctcgaagca ttcaagcaac caaagatttt caaatctttc        60
     atcgttttca aagcaaccaa caacaacgca agcaatggca gcagttacat ttgcaaccgc       120
     aatcactaac accaccgcaa gcagatcagc atccaccggg atggtacaat ttgggaattt       180
     cccatcagtg ccgttgcgat ccaccgtcgc caccacagct accacctcag tggtacaacc       240
     caagctgtac acagtacagt ttggaagcct tgaaccgatt gtcgtcaagg gtaaagcagg       300
     gtcctctgct aaggcaacct gccagcagcc tagcggtgaa ataaacgcta gcctcaagga       360
     agccgcagct ttggaggttg caaaacccaa accgaatgcc gtgttaagga tgcacgagga       420
     aatgaacaag gagagagcac tcttcttaga ctgggaaacc agtttaacaa ggcgctcata       480
     tggcattgct gacaacgaga agatcatcat gacagctcgt ggtgttagca aaatagtgct       540
     taggagctca agggcgatga aacaaaagcg cgcaagagaa aggcgcaggg cacaacaacc       600
     aattgtgctg aaatgggagc ccaagttgag cgaaatctca attggaagag gaccctctgc       660
     aaacatgatt gaggcagaag aggttcgcac gaagtggccg ttgcataaaa caccatcaat       720
     aaagaagaaa acggtgcaca aaagatgcaa gatgaatgat caaggaattg acatgttaat       780
     gcgttctttg attaaaatct ttaaggcgaa gagtgcgaac attgagttca ttggaaggaa       840
     gtccattaaa gtggattttg taaagaaaga gcaaacgaag ttcgccagag tacaagtagt       900
     gcatttgctt ggaaagcggg cacaacgcga cctgttgact ggtgcagaag agaaccactt       960
     cattgacacc ctaagcacct actcaggaaa taggagaatc ataaacccag gagtggtgtg      1020
     cgctggttgg agtggcattg ttatcagaaa cggcattttg acccagaagc agagcagaag      1080
     tccttcgcaa gcctttgtgg ttcgaggaga acatgaaggg aagttgtatg acgcaagagt      1140
     taaggtcaca aaggtgatga gccataaaat catacactat                            1180
//