ID AB179765; SV 1; linear; genomic RNA; STD; VRL; 3046 BP. XX AC AB179765; XX DT 19-MAY-2004 (Rel. 79, Created) DT 27-JAN-2009 (Rel. 99, Last updated, Version 3) XX DE Cucumber mosaic virus RNA 2 segment, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3046 RA Takeshita M., Takanami Y.; RT ; RL Submitted (17-MAY-2004) to the INSDC. RL Contact:Minoru Takeshita Graduate School of Kyushu University, Faculty of RL Agriculture, Division of Applied Genetics and Pest Management; 6-10-1 RL Hakozaki Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan XX RN [2] RA Takeshita M., Suzuki M., Kuwata S., Furuya N., Takanami Y.; RT "CMV-D8 is a natural reassortant derived from subgroups IA and IB"; RL Unpublished. XX DR MD5; e8e93872966c9614c230d46128f6621c. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3046 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="Raphanus sativus L." FT /isolate="CMV-D8" FT /mol_type="genomic RNA" FT /country="Japan:Kanagawa" FT /note="vector: pCD2" FT /db_xref="taxon:12305" FT CDS 79..2655 FT /codon_start=1 FT /transl_table=1 FT /gene="2a" FT /product="2a protein" FT /db_xref="GOA:Q6L6Q8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q6L6Q8" FT /protein_id="BAD19057.1" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEEVERVRSEQRREAAAACRNYR FT PLPAVDVSESVTEDAHSLRTPDGAPSEEVSVEFVTYGAEDYLEKSDDELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSYRTMKSFEDLVAAIYTKSDFYYDDEC FT EADDVQIDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTVASPPSLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVNDTLNIDRPVP FT ATITYHKKGITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFSCVELRIERSSSTKQRKKKDGIERRRNDKRRTPTGPYGGGEEAETKVSQAEST FT GTRSQKSQREGAFKSQAIPLPTILSSRWFGIDRDVPPCEHGGTVRV" FT CDS 2414..2749 FT /codon_start=1 FT /transl_table=1 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:O39437" FT /protein_id="BAD19058.1" FT /translation="MELNEGAMTNVELQLARMVEAKRQRRRSHKQNRRERGHKSPSERA FT RSNLRLFRFLPFYQVDGSELIEMYHHVNMVGLSESEAPCFTLPAEEDHDFDDTDWFAGN FT EWAEGSF" XX SQ Sequence 3046 BP; 758 A; 689 C; 726 G; 873 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc cctagacttt 60 ctagtttctt tctttcctat ggctttcccc gcccccgctt tctcactagc caatcttttg 120 aacggtagtt acggtgttga cactcccgag gaagtggaac gtgtgcgatc tgagcaacgc 180 agagaggctg ctgcggcctg tcgtaattac aggcccctac ccgctgtgga tgtcagcgag 240 agtgtcacag aggatgcgca ttccctccga actccagacg gagctccctc cgaagaggtg 300 tctgtagagt ttgttactta cggtgctgaa gattaccttg aaaaatctga tgatgagctc 360 cttgtcgctt ttgagacgat ggtcaaaccc atgcgaatcg gacaactgtg gtgccctgcg 420 tttaataaat gttcttttat atccagcatt gctatggcca gagctttgct gttagcaccc 480 agaacatcct accgaaccat gaagagtttt gaggacctgg tcgcggctat ttacactaaa 540 tccgatttct attacgatga tgagtgtgaa gccgacgacg ttcagataga tatctcgtct 600 cgcgatgtac ccggttactc tttcgaaccg tggtcccgaa cgtctggatt tgaaccaccg 660 cctatctgcg aggcgtgtga catgatcatg taccagtgcc cgtgttttga tttcaatgct 720 ttaaagaaat cgtgcgctga gaggacattc gctgacgatt atgttatcga aggtttagat 780 ggtgttgtcg ataatgcgac tctgttgtcg aatttaggtc catttttggt gcctgtgaag 840 tgtcaatatg agaaatgtcc aacacccacc gttgcgagtc ccccgagtct aaatcgtgct 900 actgatcgtg ttgatattaa tttagttcaa tccatttgtg actcgactct gcccacacat 960 agtaactacg acgactcttt tcatcaagtg tttgtcgaaa gtgcagacta ttctattgat 1020 ctggatcatg ttagacttcg ccagtctgat cttattgcta aaattccaga ttcagggcat 1080 atgataccgg ttttgaacac cgggagcggt cacaagagag taggtacgac gaaggaggtc 1140 cttacagcta tcaagaaacg taatgctgac gttccagagc taggtgattc cgttaatctg 1200 tccagattga gcaaggctgt ggctgagaga ttcttcatct catacatcaa tggtaactct 1260 ttagcatcca gcaactttgt taatgtcgtt agtaacttcc acgattatat ggaaaaatgg 1320 aagtcctcag gtctatcgta tgatgatctt ccggatcttc atgctgagaa tttgcagttt 1380 tatgatcata tgataaaatc tgatgtgaaa cctgtagtga acgacacact caacatcgac 1440 agaccggttc cggctactat aacgtatcat aagaagggta taacctccca gttctcaccg 1500 ttgtttactg cgctatttga gcgtttccag agatgccttc gagaacgcat tattcttcct 1560 gttggaaaga tttcatccct tgagatggca ggatttgatg ttaagaacaa gcactgtctc 1620 gagattgatt tgtccaaatt cgacaagtct caaggtgaat tccatttgat gattcaggaa 1680 cacattttga atggtctagg gtgcccagct ccgataacta agtggtggtg tgatttccac 1740 agattctctt acattagaga ccgcagagct ggcgttggta tgcccatcag tttccagaga 1800 cgaactggtg atgcgttcac ctattttggt aataccattg tcaccatggc tgaatttgcg 1860 tggtgttacg acaccgacca attcgaaaag cttttattct caggcgatga ttctctagga 1920 ttttcagtac ttccccctgt tggtgatccg agtaaattca cgactctttt caacatggaa 1980 gctaaggtga tggagcccgc agtaccatat atttgttcga agttcttact ctctgacgag 2040 ttcggtaaca ctttttccgt tccagaccca ttgcgcgagg ttcagcggtt aggcacgaag 2100 aaaatcccct attcagacaa tgatgaattc ctgtttgctc acttcatgag ctttgttgat 2160 cgattgaagt ttttggaccg aatgactcag tcttgtatcg atcaactttc tctcttcttt 2220 gagttgaaat acaggaagtc tggggctgag gctgctttaa tgttaggcgc ctttaagaaa 2280 tataccgcta atttccagtc ctataaagaa ctctactatt cagatcgtcg tcagtgcgaa 2340 ttgatcaatt cgtttagttg tgtagagtta aggattgagc gttcgagttc cactaagcag 2400 cgaaagaaga aagatggaat tgaacgaagg cgcaatgaca aacgtcgaac tccaactggc 2460 ccgtatggtg gaggcgaaga ggcagagacg aaggtctcac aagcagaatc gacgggaacg 2520 aggtcacaaa agtcccagcg agagggcgcg ttcaaatctc aggctattcc gcttcctacc 2580 attctatcaa gtagatggtt cggaattgat agagatgtac caccatgtga acatggtggg 2640 actgtccgag tctgaggccc cttgtttcac gttgccagcg gaagaagacc atgatttcga 2700 cgatacagat tggttcgctg gtaacgaatg ggcggaaggg tcgttctgaa cctccccttc 2760 ctaatctcct ccggttttct gaggcgggag ctgagttggc agtattgcta caaactgtct 2820 gaagtcacta aacgttttac ggtgaacggg ttgtccatcc agctaacggc taaaatggtc 2880 agtcgtggag agatccacgc cgaaggctta caagtcttcg aggcaccttt gaaaccatct 2940 cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaatgtg ctggtttcag 3000 ggtacgggtg cccctcgctc tgcgggggtc ctccaaaagg agacca 3046 //