ID AB179764; SV 1; linear; genomic RNA; STD; VRL; 3380 BP. XX AC AB179764; XX DT 19-MAY-2004 (Rel. 79, Created) DT 27-JAN-2009 (Rel. 99, Last updated, Version 3) XX DE Cucumber mosaic virus RNA 1 segment, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3380 RA Takeshita M., Takanami Y.; RT ; RL Submitted (17-MAY-2004) to the INSDC. RL Contact:Minoru Takeshita Graduate School of Kyushu University, Faculty of RL Agriculture, Division of Applied Genetics and Pest Management; 6-10-1 RL Hakozaki Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan XX RN [2] RA Takeshita M., Suzuki M., Kuwata S., Furuya N., Takanami Y.; RT "CMV-D8 is a natural reassortant derived from subgroups IA and IB"; RL Unpublished. XX DR MD5; d90d3b4c135c8252b80d5c7b61a974b9. DR EuropePMC; PMC5814493; 29449390. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3380 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Raphanus sativus L." FT /isolate="CMV-D8" FT /mol_type="genomic RNA" FT /country="Japan:Kanagawa" FT /note="vector: pCD1" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q6L6Q9" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6L6Q9" FT /protein_id="BAD19056.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLTEKINSTIFSRVRKFKTMVAFDFVNESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGICPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATR FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEAPSPTPDDTADVCGREQEVSELDSLSA FT QTRSPITRVAERATAMIEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMHPVPEGIVYSVGYNERGLGPKSDGELYIVNSECVICNSEA FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFQS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAVASVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWDERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYSGVLNGDLIAEC FT IARA" XX SQ Sequence 3380 BP; 854 A; 750 C; 819 G; 957 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacctctctt tctcaatctt ttctctgaaa ttcctatggc gacgtcctcg ttcaacatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac agcatcaacg tagaggccgt aaggtctaca 240 tccgaaacgt tttgggtgta aaggattctg aggtcatccg gaatcggtat ggagggaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caagacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgct 480 gttccccttg tctgggtatc cgcgataaga tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggac ttctgcactc 600 atccggctgc ggattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaagcga tgaatgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gctatgatgt ttgacgacca aggtgtaata cctgagctta 780 attgtcagtg gagaaagatc aggagtgctt tctctgaaac tgaagacgtc acaccgctga 840 ctgagaaaat taattccacg atattttccc gcgtgcgtaa attcaagact atggtggctt 900 tcgattttgt caatgagtct actatgtctt atgttcatga ttgggagaat ataaaatctt 960 ttctcacgga tcagacttat tcataccgag ggatgaccta tggtattgag cggtgcgtta 1020 tccacgctgg tattatgacg tataagatca ttggtgtacc tgggatatgc ccacccgaac 1080 tcattcgaca ttgcatttgg ttcccctcta ttaaggacta tgttggtcta aagattcccg 1140 cgtcgcagga tttggttgaa tggaaaacag tgcgtatttt aacgtcaaca ttacgtgaaa 1200 cggaagagat tgctatgagg tgttacaacg ataagaaagc atggatggaa caattcaagg 1260 ttatcctagg tgttctatct gcgaaatcat ctaccattgt tatcaatggt atgtccatgc 1320 aatctggcga acgcatagat attaacgatt atcattatat tggcttcgct atccttctgc 1380 acacaaaaat gaagtatgaa caactgggaa aaatgtatga catgtggaat gcttcgagta 1440 tctcgaagtg gtttgcagcg ttgactcgtc cgttgcgtgt atttttctcc agtgtcgttc 1500 acgcgctgtt cccgactttg agaccccgcg aggaaaagga attcctgatc aagctctcca 1560 cttttgttac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catctgctgc atacgttgct acgcgggctg ttaccgatgg gaaagttttg gctgcgcaga 1680 aagccgagaa gctcgctgag aagcttgcac aacccgtgat tgaggtatcg gacagacctg 1740 aggcgccatc tccaacgcct gatgatacgg ctgatgtttg tggaagggag caagaggttt 1800 cggaacttga ctctctatca gctcagacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgctat gatagagtat gccgcttatg agaaacagtt acatgacacg acagtgtcta 1920 atttgaaacg tatttggaac atggcgggtg gtgatgacaa gagaaactcc cttgagggta 1980 atttgaagtt tgttttcgac acgtatttta ccgttgatcc catggtgaat attcatttct 2040 ccacgggtcg gtggatgcat cctgtgcctg agggaattgt ttactctgtc ggttataatg 2100 aacgcggtct aggtcctaag tctgatggag agctttacat tgtcaatagt gagtgtgtga 2160 tttgcaatag cgaagcttta tctgctgtca ctcgttcact acaagctcca actggaacta 2220 tcagtcaagt tgacggagtt gctggttgtg ggaagaccac ggcaataaaa tccatttttg 2280 agccgtccac tgacatgatc gtgaccgcga acaagaaatc cgctcaagac gttcgaatgg 2340 cacttttcca atcgtcggac tccaaagaag cttgcacctt cgttcgtact gccgattccg 2400 tcctacttaa tgaatgtcca actgtcagta gggttttggt tgacgaggtt gtgctgcttc 2460 attttggtca actgtgtgct gtcatgtcca agctgaaggc tgtgcgagct atatgttttg 2520 gggattcgga gcaaattgct ttttcttctc gcgatgcctc gtttgatatg cgtttctcga 2580 agattattcc tgatgaaact agtgatgcgg atactacatt ccgtagccca caagacgttg 2640 tgcctcttgt gcgtttaatg gctacgaagg ctcttccgaa aggaactcat tcgaagtaca 2700 cgaaatgggt ttctcaatct aaagtgaaaa gatctgttac atctcgtgcc gtcgctagcg 2760 tgacattggt tgatctggat ccttccaggt tttatatcac gatgacccaa gctgataagg 2820 cctcactgat ttcaagagca aaagagatga acttaccaaa gactttctgg gacgaaagga 2880 ttaaaaccgt gcatgagtct caaggcatct ctgaagatca cgttactttg gtaagattaa 2940 agagcacaaa atgtgacctg ttcaaaaaat tttcatattg tctcgttgcc ttgacgagac 3000 acaaggtcac attccgctat gagtacagtg gtgtattaaa cggcgattta atcgccgaat 3060 gtatcgctcg tgcttagcgg tgtccccttc ggtggacctc cctccaatct tctgaggcgg 3120 gagctgagtt ggcagttctg ctacaaactg tctgaagtca ctaaacgctc tgcggtgaac 3180 gggttgtcca tccagcttac ggctaaaatg gtcagtcgtg gagaaatcca cgccagtaga 3240 cttacaagtc tctgaggcgc ctttgaaacc atctcctagg tttcttcgga aggacttcgg 3300 tccgtgtact tctagcacaa gatgctagtt tcagggtacg ggtgccctcc cactttgtgg 3360 gagcctccaa aaggagacca 3380 //