ID AB178947; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC AB178947; XX DT 13-MAY-2004 (Rel. 79, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 4) XX DE Honeysuckle yellow vein mosaic virus DNA, complete genome, isolate:OT1. XX KW . XX OS Honeysuckle yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Were H.K., Takanami Y.; RT ; RL Submitted (11-MAY-2004) to the INSDC. RL Contact:Yoichi Takanami Kyushu University, Faculty of Agriculture; 6-10-1 RL Hakozaki, Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan XX RN [2] RA Were H.K., Takanami Y.; RT "Honeysuckle yellow vein mosaic virus"; RL Unpublished. XX DR MD5; 14c2dfa55ba1c535060bf0a2107edc60. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Honeysuckle yellow vein mosaic virus" FT /isolate="OT1" FT /mol_type="genomic DNA" FT /country="Japan:Oita, Maetsue" FT /clone="pHSOITA" FT /note="synonym:Honeysuckle-infecting geminivirus" FT /db_xref="taxon:180587" FT CDS 137..487 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q6L6W0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6L6W0" FT /protein_id="BAD18943.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLIRDL FT IGVVRAKNYVEATSRYRDFHSRIQGTSPSELRRPVCQPCECPHCPRHKQKEIMGSKAHV FT SEAQDIQDVQKP" FT CDS 297..1070 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q6L6V9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6L6V9" FT /protein_id="BAD18944.1" FT /translation="MSKRPADIGIFTPAFRARRRLNFDGPYVSRVNVPIAQGTSKKRSW FT AQRPMYRKPRIYRMYRSPDVPKGCDGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKLKNHTNNVIFWLVRDRRPVSVPYGFQEAFNMYENE FT PSTATIKQDLRDRLQVLHKFTGTVTGGQYASKEQAMIKRFWRLNHHVTYNHQEAAKYAN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1067..1471) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q6L6V8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6L6V8" FT /protein_id="BAD18945.1" FT /translation="MDSRTGDIITAAQAQSGAYIWTVPNPLYFKITSHAQRPFNMDQDI FT ITAQIQFNYNLRSQLGLHKCFLTFKIWTLSQHQTSHFLILFRTQVLKYLDDLGVISINN FT VIRAVDHILYDVLDGTEYVQQFTDIKFKLY" FT CDS complement(1212..1619) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="transcriptional trans-activator protein" FT /db_xref="GOA:Q6L6V7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6L6V7" FT /protein_id="BAD18946.1" FT /translation="MQPSSPSTAHSTPVPIKVRHRSEKKRAPRRRRIDLDCGCSIYVSL FT GCANHGFTHRGHHHCSSGSEWRVYLDSAKSPLFQNHEPRTTTVQHGSGYNHSTDPVQLQ FT PQISTGSTQVLPDFQDLDSLTTSDLAFLNFI" FT CDS complement(1519..2610) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q6L6V6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6L6V6" FT /protein_id="BAD18947.1" FT /translation="MAPPKRFKINSKNYFLTYPHCSLTKEEALAQIQALQTPTKKLFVR FT ICRELHEDGSPHLHILIQFEGKYQCTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKAYM FT EKDGDVVDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDRIFAPPLEEFVSPFLSSSFDQVPEQLEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLHPRHNYLCGHLDLNPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPSNTKGGIPTIFLCNPGPTSSYTEYLDEEKNAALKAWAIKNATFITLYGP FT LYSGTHQGATQIREEESTTQAED" FT CDS complement(2160..2453) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6L6V5" FT /protein_id="BAD18948.1" FT /translation="MGALISTSSSNSKGNTNAQINDSSISYPHLGQHISIQTFRELRAR FT QMSRPTWKKTETSLILEFSRSMEDQLEEVASLPTTHMPRQSTQGPSHRPCLY" XX SQ Sequence 2763 BP; 718 A; 563 C; 641 G; 841 T; 0 other; accggatggc cgcgcggaat ttcgtggtgg gccccccctg tcggccaata gaattagtgc 60 cttgaaagtt agataagtgg atgttgacgt catcttttgt ctttatatac gtcagcccta 120 attttaaagg ttaaacatgt gggatccttt acttaatgat ttccctgaaa ccgtacacgg 180 ttttaggtgt atgctagcgg ttaaatacct tcttctggtt gaggctacat actctccgga 240 tacggtgggt tacgatctca tacgcgatct tataggtgtt gttcgtgcga agaattatgt 300 cgaagcgacc agcagatata gggattttca ctcccgcatt cagggcacgt cgccgtctga 360 acttcgacgg cccgtatgtc agccgtgtga atgtccccat tgcccaaggc acaagcaaaa 420 agagatcatg ggctcaaagg cccatgtatc ggaagcccag gatatacagg atgtacagaa 480 gccctgatgt acctaagggt tgtgatggcc cttgtaaggt ccagtctttc gagaagaaag 540 atgatgttgg tcactctggt aaaatgttat gtatctccga tattactcgt ggtaatgggc 600 ttacacatcg tgttggtaag aggttttgta taaaatcagt ctatatcatt ggaaagatat 660 ggatggatga gaacattaag ctcaagaatc acactaataa cgtgatcttc tggcttgtta 720 gagatagacg ccctgtttcc gttccttatg gtttccaaga ggcgtttaat atgtatgaaa 780 atgaacctag tacagctact atcaaacagg atttgagaga ccgcttgcag gttttacaca 840 agttcactgg tacggttaca ggtggacagt atgcgtctaa ggaacaagct atgatcaagc 900 gtttttggag gttgaatcac catgtcacat acaatcacca agaggctgct aaatatgcga 960 accatactga aaatgctttg ttattgtata tggcctgtac tcatgccagt aatccagtgt 1020 atgctacatt aaaaattaga gtgtatttct acgattcagt acagaattaa taaagcttga 1080 attttatatc agtaaattgt tgtacatact ctgttccatc taatacatcg tataatatat 1140 gatcaactgc cctaattaca ttattaattg aaattacacc caaatcatct aaatatttca 1200 acacttgtgt cctaaataaa attaagaaat gcgaggtctg atgttgtgag agagtccaaa 1260 tcttgaaagt caggaagcac ttgtgtagac ccagttgaga tctgaggttg tagttgaact 1320 ggatctgtgc tgtgattata tcctgatcca tgttgaacgg tcgttgtgcg tggctcgtga 1380 ttttgaaata aaggggattt ggcactgtcc agatatacgc gccactctga gcctgagctg 1440 cagtgatgat gtcccctgtg cgtgaatcca tgatttgcac accctaaact gacgtatata 1500 gaacacccgc agtccagatc aatcctccgc ctgcgtggtg ctctcttctt ctctgatctg 1560 tgtcgcacct tgatgggtac cggagtagag tgggccgtag agggtgatga aggttgcatt 1620 tttaattgcc caggccttta gggcagcatt cttctcctcg tctaaatact ctgtgtatga 1680 tgacgttggg cctggattgc agaggaagat tgttgggata ccacctttgg tgttgcttgg 1740 tttcccgtac ttggtgttgc tttgccagtc cctttgggcc cccatgaatt ctttaaagtg 1800 ctttaggtag tggggatcca cgtcatcaat gacgttgtac catgcctcgt tgctgtaaac 1860 cttggggttt aagtcaaggt ggccacaaag gtaattatga cgtggatgta gagacctggc 1920 ccacatagtc ttccctgtcc tgctatcccc ttctatcaca atactcatgg gcctccacgg 1980 ccgcgcagcg gaatccctga cgttctctgc agcccattcc tcgagttgct ctggaacttg 2040 atcaaaggaa gaagataaaa aaggagaaac aaattcctcc aacggaggag caaaaatcct 2100 atctaaatta ctatttaaat tatgaaattg taaaacaaaa tctttgggag ctttctctct 2160 taatatagac aaggccgatg acttggaccc tgagttgatt gcctcggcat atgcgtcgtt 2220 ggcagactgg caacctcctc tagctgatct tccatcgacc tggaaaactc caaaatcaac 2280 gacgtctccg tctttttcca tgtaggcctt gacatctgac gagctcttag ctccctgaat 2340 gtttggatgg aaatgtgctg acctagatgg ggatacgaga tcgaagaatc gttgatttgt 2400 gcattggtat ttcccttcga attggatgag gatgtggaga tgagggctcc catcttcgtg 2460 tagttctctg cagattcgga cgaataattt tttcgttggt gtttgtaggg cttgaatttg 2520 tgcaagggct tcttctttgg ttagagagca gtgtgggtat gtgaggaaat aatttttgct 2580 atttatttta aaacgcttcg gtggtgccat atttacaaat atgcccttgt accccgattc 2640 ggagagaaac cttctttgct gtgaatcggt gtaatggggt acaatatata ctcctcctct 2700 ttttactttt taattttgaa attcaaaatt caaattggta aagcggccca tccgtataat 2760 att 2763 //