ID AB176849; SV 1; linear; genomic RNA; STD; VRL; 3397 BP. XX AC AB176849; XX DT 14-APR-2004 (Rel. 79, Created) DT 14-APR-2004 (Rel. 79, Last updated, Version 1) XX DE Cucumber mosaic virus DNA, complete RNA1 segment, strain: TN. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3397 RA Hase S.; RT ; RL Submitted (12-APR-2004) to the INSDC. RL Shu Hase, Graduate School of Agricultural Science, Tohoku University, RL Laboratory of Plant Pathology, Department of Applied Plant Science; RL 1-1,Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, Miyagi 981-8555, Japan RL (E-mail:hase@bios.tohoku.ac.jp, Tel:81-22-717-9659, Fax:81-22-717-9659) XX RN [2] RA Takanami H., Hase S., Karasawa A., Takahashi H., Ehara Y.; RT "Genomic and satellite RNA sequence of Cucumber mosaic virus strain TN."; RL Unpublished. XX DR MD5; 5bb34c3055d6c69fbaae19cebf71d388. DR EuropePMC; PMC3650197; 24426254. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3397 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /lab_host="Nicotiana tabacum" FT /strain="TN" FT /mol_type="genomic RNA" FT /country="Japan" FT /isolation_source="tomato" FT /clone="pCTN1-T7" FT /db_xref="taxon:12305" FT CDS 96..3074 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q75ND4" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q75ND4" FT /protein_id="BAD15372.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMSMRKVILNDPQQFDGRQ FT PDFCTKSAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSSVFSRVRDGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCVWFPSMK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRPREEKEFLVKLSTFVTFNEECSFDGGKEWDVISSAAFVAAQ FT AVADGAILAEEKAKKLADRLAVPVEEVSAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFDT FT YFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRTKYSRWV FT SQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIKT FT VHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIATCI FT PLV" XX SQ Sequence 3397 BP; 858 A; 738 C; 789 G; 1012 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 ttcttcttct cgacttttct tagtttaaaa ttcctatggc aacgtcctca ttcaacatca 120 atgaactggt agcctcccac ggcgataaag gactacttgc gacagccctc gttgataaga 180 cagctcatga acagctggag gagcaacttc aacatcaacg tagaggcctt aaggtctaca 240 tccgtaatgt tttggatgta aaggactccg aagtcattcg gactcggtat ggtggtaagt 300 acgacctcca tctcacccag caggaattag ctccccatgg cctcgctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactttt tccctcgttc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac actatcttcg cggacacaac gtacattgct 480 gctccccatg tttgggtatt cgtgacaaga tgcgtcacac tgaaagattg atgagcatgc 540 gcaaggtcat tttaaacgat ccacaacagt ttgatggccg ccagccggac ttttgcacta 600 agtctgcagc tgaatgcaaa gttcaagccc actttgctat ttctatacac ggaggatatg 660 atatgggctt tagaggttta tgtgaggcaa tgaacgctca cggaactacg attttgaaag 720 ggacgatgat gttcgacggt gctatgatgt ttgacgacca aggctttatt cctgaactta 780 aatgtcagtg gcgaaaaatt aaatccgcct tttctgagga ggaggatgcc acttgtttag 840 cagctaaact caattctagt gtcttttcac gcgtgcgaga tgggaaaacc ttaatcgcat 900 ttgacttcgt tgaggaatcc acgatgtctt atgttcacga ttgggataat ataaaatcgt 960 ttatgacaga tcaaacgtac tctttcaatg gtatgaccta tggaattgag cgttgtgtta 1020 tttacgctgg cgtgatgact tacaagattg ttggcgtgcc tggtatgtgc ccacccgaac 1080 tcattcgaca ttgtgtctgg ttcccctcta tgaaggacta tgttggtctt aagattcccg 1140 cgtctgatga cttggttaaa tggaaaacag tccgtatttt actgtcaaca ttacgtgaga 1200 ctgaagaaat agctatgcgt tgttataacg acaagaagaa ttggatggat caattcaaga 1260 ttattctcgg tgttttatca tcgaaatcct ccacgatcgt tatcaatggt atgtctatgc 1320 aatccggtga acgtattgat ctcaatgatt atcattacat cggttttgct atccttctcc 1380 acacgaaatt aaaatacgaa caacttggga aaatgtacga tatgtggaat gcttccttca 1440 tttggaagtg gtttgcgtct atgtctagac cattccgtgt tttcttttcc actgttgtta 1500 agactttgtt tccgactttg agaccgcgcg aggaaaagga gtttttggtc aaactttcca 1560 ctttcgtcac ctttaacgag gagtgctctt ttgacggagg gaaagaatgg gacgtgatat 1620 catcagcggc tttcgtagcc gctcaggctg ttgcagatgg tgctattctg gccgaggaga 1680 aagctaagaa attagctgat cgtctggccg tgcctgttga agaagtatct gctattcctg 1740 aggtgtctcc tacacctgtt gatcagggca ctgcttgtgg actggaaaca gaaacatcgg 1800 aactggattc tctgtctgcc caaacacgtt cccccatcac acggatcgct gaaagagcga 1860 ccgctatgct tgaatattca gcttatgaga aacaattgca cgataccacc gtttcaaatc 1920 ttcaacgaat ttggtgcatg gcaggtggcg acaacaagag aaactcttta gagagtaatt 1980 tgaaatttgt gtttgacact tatttttctg ttgacgccct ggtgaatgtt cactttccta 2040 ctgggaggtg gatgcatcct gtgcctgagg gcgtggtata ctctgttggt tataatgaga 2100 agggtcttgg tcctaaactt gatagtgagt tgtacatagt taatggtgat tgtgtgattt 2160 cgaacagtca tgatttgttt tcaatcacta aatctttgtt agctcccacc ggaaccatca 2220 gccaagtcga tggtgtggct gggtgcggaa aaaccactgc tataaaatcc atgtttaatc 2280 cttccacaga tataattgtc acagccaaca agaaatctgc tcaagatgtg cgttatgcgc 2340 tgtttaaatc tactgactcc aaagaagctt gtgcttttgt taggaccgct gattccatat 2400 tactcaatga ttgccctacg gtgtctcgag tgcttgtgga tgaagttgtt ttgttgcact 2460 ttggtcagtt gtgcgctgtc atgtcgaaac ttcatgctgt cagagctttg tgtttcggag 2520 actccgaaca gatagctttc tcctctcgtg acgcttcgtt cgacatgcgt ttctctaagc 2580 ttattccgga tgagaccagt gatgcggaca caactttccg tagtccacaa gatgtagtac 2640 cacttgtgcg tttgatggct acgaaggctc taccgaaagg gacccgtacg aaatactcaa 2700 gatgggtgtc ccaatctaaa gtgaggaagt ctgttacttc gcgtgctgtt gctagtgtat 2760 ctctagttga actggacccc accagattct atattacgat gacgcaagct gataaagcct 2820 cactaatcac tagagctaag gaactgaacc tacccaaggc attctacact gataggataa 2880 agactgtcca tgaatctcaa ggcatttcag aagatcatgt gaccctggtt aggttgaaga 2940 gtactaaatg tgacctgttc aagaaatttt cctactgctt agttgcagtt actcgacaca 3000 aggtcacctt ccgctatgag tactgtggtg tgttaggtgg ggacctaatc gctacttgta 3060 ttccgttagt ctgaacgcgg aaggtccgaa gacgttaaac tacactctct ttattgcgag 3120 tgctgagttg gtagttttgc tttaaactat ctgaagtcgc taaatccagt attggtactg 3180 gttgtgaacg ggttgtccat ccagcttacg gctaaaatgg tcagtcatgc cccaaaggca 3240 tgccgacacc ctacagggtt gtcgaggtac ccttgaaatc atctcctaga tttcttcgga 3300 agggcttcgt gagaagctcg tgcacggtaa tacactgata ttaccaagag tgcgggtatc 3360 gcctgtggtt ttccacaggt tctccataag gagacca 3397 //