Dbfetch
ID AB116633; SV 1; linear; genomic DNA; STD; VRL; 2787 BP. XX AC AB116633; XX DT 20-JAN-2004 (Rel. 78, Created) DT 03-JUN-2010 (Rel. 105, Last updated, Version 5) XX DE Tomato yellow leaf curl virus-Mild [Japan:Atumi] DNA, complete genome. XX KW . XX OS Tomato yellow leaf curl virus-Mild [Japan:Atumi] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2787 RA Ueda S., Kimura T., Onuki M., Hanada K., Iwanami T.; RT ; RL Submitted (07-AUG-2003) to the INSDC. RL Contact:Shigenori Ueda National Agricultural Institute for Kyushu Okinawa RL Region; 1823 Mii, Kurume, Fukuoka 839-8503, Japan XX RN [2] RA Ueda S., Kimura T., Onuki M., Hanada K., Iwanami T.; RT "Three distinct groups of isolates of Tomato yellow leaf curl virus in RT Japan and construction of an infectious clone"; RL J. Gen. Plant Pathol. 70:232-238(2004). XX DR MD5; fe224e0f65c787bc1770eadea6d31e86. DR EuropePMC; PMC2224568; 17977971. XX FH Key Location/Qualifiers FH FT source 1..2787 FT /organism="Tomato yellow leaf curl virus-Mild FT [Japan:Atumi]" FT /host="Lycopersicon esculentum" FT /strain="Atu" FT /mol_type="genomic DNA" FT /country="Japan:Aichi, Atumi" FT /note="TYLCV-Mld[JR:Atu]" FT /db_xref="taxon:503404" FT CDS 314..664 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q764F6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q764F6" FT /protein_id="BAD07438.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT CDS 474..1250 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q764F5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q764F5" FT /protein_id="BAD07439.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQFYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTNNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1247..1651) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:Q764F4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q764F4" FT /protein_id="BAD07440.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRHQVLKYLDSIGVISINN FT VIRAVDHVLYDVLEKTINVTETHDIKYKFY" FT CDS complement(1392..1799) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:Q764F3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q764F3" FT /protein_id="BAD07441.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1708..2787) FT /codon_start=1 FT /transl_table=1 FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:Q764F2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q764F2" FT /protein_id="BAD07442.1" FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKDLETPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV FT DKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FAGINQGPTQDSQEETNKA" FT CDS complement(2328..2630) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q764F1" FT /protein_id="BAD07443.1" FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSQRLLESLKN" XX SQ Sequence 2787 BP; 763 A; 539 C; 609 G; 876 T; 0 other; atggtcaatg agtaccgatt gaccaagatt tttacactta tccctggtgt atcggtactc 60 aatatatagt gagtaccaaa tggcattttg gtaattttgt aaaagtacat tgcaattcaa 120 aattcaaaat tcaaaaatca aatcattaaa gcggccatcc gtataatatt accggatggc 180 cgcgccttta actttatgcc cggtccccac gaggtttcca cagtctatta atcaatcaaa 240 ttgcatcctc aaacgttaga taagtgttca tttgtcttta tatacttggt ccccaagtat 300 tttgtcttgc aatatgtggg atccacttct aaatgaattt cctgaatctg ttcacggatt 360 tcgttgtatg ttagctatta aatatttgca gtccgttgag gaaacttacg agcccaatac 420 attgggccac gatttaatta gggatcttat atctgttgta agggcccgtg actatgtcga 480 agcgaccagg cgatataatc atttccacgc ccgcctcgaa ggttcgccga aggctgaact 540 tcgacagccc atacagcagc cgtgctgctg tccccattgt ccaaggcaca aacaagcgac 600 gatcatggac gtacaggccc atgtaccgga agcccagaat atacagaatg tatcgaagcc 660 ctgatgttcc ccgtggatgt gaaggcccat gtaaagtaca gttttatgag caacgggatg 720 atattaagca tactggtatt gttcgttgtg ttagtgatgt tactcgtgga tctggaatta 780 ctcacagagt gggtaagagg ttctgtgtta aatcgatata ttttttaggt aaagtctgga 840 tggatgaaaa tattaagaag cagaatcaca ctaatcaggt catgtttttc ttggtccgtg 900 atagaaggcc ctatggaaac agcccaatgg attttggaca ggtttttaat atgttcgata 960 atgagcccag taccgcaaca gtgaagaatg atttgcggga taggtttcaa gtgatgagga 1020 aatttcatgc tacagttatt ggtgggccct ctggaatgaa ggaacaggca ttagttaaga 1080 gattttttag aattaacagt catgtaacta ataatcatca ggaggcagcc aagtacgaga 1140 accatactga aaacgccttg ttattgtata tggcatgtac gcatgcctct aatccagtgt 1200 atgcaactat gaaaatacgc atctatttct atgattcaat atcaaattaa taaaatttat 1260 attttatatc atgagtttct gttacattta ttgtcttttc aagtacatca tacaatacat 1320 gatcaactgc tctgattaca ttgttaattg aaattacacc aatactatct aaatacttaa 1380 gaacttgatg tctaaatact cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa 1440 ttcggaagtt gagaaaacat ttgtgaatcc ccaatacctt cctgatgttg tggttgaatc 1500 ttatctgaat ggaaatgatg tcgtggttca ttagaaatgg cctctggctg tgttctgtta 1560 tcttgaaata gaggggattg tttatctccc agataaaaac gccattctct gcttgaggag 1620 cagtgatgag ttcccctgtg cgtgaatcca tgattgttgc agttgaggtg gaggtagtat 1680 gagcagccac agtctaggtc tacacgctta cgccttattg gtttcttctt ggctatcttg 1740 tgttggacct tgattgatac ctgcgaacag tggctcgtag agggtgacga aggttgcatt 1800 cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatatt ccctatatga 1860 ggaggtaggt cctggattgc agaggaagat agtgggaatt ccccctttaa tttgaatggg 1920 cttcccgtac tttgtgttgc tttgccagtc cctctgggcc cccatgaatt ccttgaagtg 1980 ctttaagtaa tgcgggtcta cgtcatcaat gacgttgtac cacgcatcat tactgtacac 2040 ctttggactt aggtctagat gtccacataa ataattatgt gggcctagag acctggccca 2100 cattgttttg cctgttctgc tatcaccctc aatgacaata ctattaggtc tccatggccg 2160 cgcagcggaa gacacgacgt tctcggacac ccatacttca agttcatctg gaacttgatt 2220 aaaagatgaa gataaaaagg gagaaatata aggagccgga ggctcctgaa aaattctatc 2280 taaattacta tttaaattat gaaattgtaa aatataatct tttggtatta attctttaat 2340 gattctaaga gcctctgact tactgcctga gttaagagct gcggcgtaag cgtcattggc 2400 tgactgctga cccccacgtg cagatcgtcc gtcgatctga aactcacccc agtcgacggt 2460 gtctccgtcc ttatcgacat aagacttgac gtctgaactg gatttagctc cctgaatgtt 2520 tggatggaaa tgtgctgccc tgcttgggga taccaggtcg aagaatcgct gattttggca 2580 cttgaatttc ccttcaaatt ggataagcac atggagatgt ggttccccat tctcgtggag 2640 ttctctgcaa actttgatgt attttttatt tgttggggtt tctaggtctt ttaattggga 2700 aagtgcttct tctttcgtta aggagcactt aggatatgtg aggaaataat ttttgcaatt 2760 tatttggaag cgcttagggg gagccat 2787 //