ID AB114138; SV 1; linear; genomic RNA; STD; VRL; 6081 BP. XX AC AB114138; XX DT 20-AUG-2004 (Rel. 80, Created) DT 04-OCT-2005 (Rel. 85, Last updated, Version 2) XX DE Lettuce big-vein virus genes for coat protein, protein 2, protein 3, DE protein 4, protein 5, complete cds. XX KW . XX OS Lettuce big-vein associated varicosavirus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; Varicosavirus. XX RN [1] RP 1-6081 RA Sasaya T., Koganezawa H.; RT ; RL Submitted (04-JUL-2003) to the INSDC. RL Takahide Sasaya, National Agricultural Research Center for Western Region, RL Laboratory of Plant Virology; 1-3-1 Senyu, Zentsuji, Kagawa 765-8508, Japan RL (E-mail:tsasaya@affrc.go.jp, Tel:81-877-62-0800, Fax:81-877-63-1683) XX RN [2] RX DOI; 10.1099/vir.0.80061-0. RX PUBMED; 15302964. RA Sasaya T., Kusaba S., Ishikawa K., Koganezawa H.; RT "Nucleotide sequence of RNA2 of Lettuce big-vein virus and evidence for a RT possible transcription termination/initiation strategy similar to that of RT rhabdoviruses"; RL J. Gen. Virol. 85(Pt 9):2709-2717(2004). XX DR MD5; 39ba5d50329bed35f475e508fedc9394. DR EuropePMC; PMC5861215; 29593700. XX FH Key Location/Qualifiers FH FT source 1..6081 FT /organism="Lettuce big-vein associated varicosavirus" FT /segment="2" FT /mol_type="genomic RNA" FT /db_xref="taxon:1985698" FT mRNA 4..1433 FT CDS 210..1403 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /note="gene 1" FT /db_xref="GOA:Q91QN9" FT /db_xref="InterPro:IPR004902" FT /db_xref="UniProtKB/Swiss-Prot:Q91QN9" FT /protein_id="BAD36830.1" FT /translation="MAHPKLKMLDAFSDVVEITGKTAGKESWDDESTIAMPSYKLSVLS FT DADAVREVKIFLTGLFVRSSPRAIAAALIMTWNMRSVDPVAVRIFPAKDKGKDTADVDV FT KNLEVPGVDYIDAMVETNVKDASDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQ FT KRYADFCKTEYPFKEFTTNNKCAETMYEAYQGQKLYQGTLGRILYALGDVADPRQTEML FT FDQHLANTGMHIIPQFTNAQLSIGATTAGLLSALNYGQNFGTLMQLKKLINESLSKPPG FT PDNRATWRFARIFDPSVFQTLQTKYCADTVAILANINSMGKLSTETSNPLNIAVLKQMA FT PERKRYTRQVAKNIYHHFMVVARALNNDMFDTDKYKFVESDDEEEHVANEGETPVKE" FT mRNA 1435..2573 FT CDS 1493..2494 FT /codon_start=1 FT /transl_table=1 FT /product="protein 2" FT /note="gene 2" FT /db_xref="UniProtKB/Swiss-Prot:Q68Y31" FT /protein_id="BAD36831.1" FT /translation="MTGRFVRDQSAMTKAIASSGKAGQETTKQTTSAEKLESENALLST FT VKEMNQGWMSRLGAGNDYDETEADPADTYGDTEADLPPTIKPEHIKKETRKQDKALGIK FT NVAGTSESERKALKQWDEDENKSDTEKLAFLAGFRYRQDHNSVVLRAQTEQLKSLVDIL FT TSSATSVSRAASDIVNATTMSTSKLAAAITKHIEVPPHETLTKIEMPKLPLISSEAGSI FT SGVKSVDGKSVDEEIIDSNKKESTRIKEEAKTPKPQIVTPPVIDSGPIITVGQMASVLG FT GEVKDILEFYEIGMEKFESVAKDLGLSYEGLLRKYGGLSGLKGTLKKKINLL" FT mRNA 2575..3813 FT CDS 2617..3489 FT /codon_start=1 FT /transl_table=1 FT /product="protein 3" FT /note="gene 3" FT /db_xref="UniProtKB/Swiss-Prot:Q68Y30" FT /protein_id="BAD36832.1" FT /translation="MSLKSAPYLSEISVSNGDSGIGFDGGCADPYAPSRVPSRRWDYST FT KWDMKITGAAREFNLSKQPVLTGLINSMRMKTSLTHPEIHVVWRGLVPPAVCRDDVVVT FT LRFTPDRSEKMGLIAQHTHGMHLYMHHVFYPSHSIRVGPGEPLPWAVGFSVPDFSLDPN FT YTIAEVHVRLTGYFSELPEYDIQRDSELISIVPMEEHVTGYATSAPRIPNTAWVARGYK FT IGVNGNSLAKKIKFLQEIGVDIEALRMVGQLDNTLKKVSPRAIDGSPSAEAKSEAARLV FT NAHVKTLTA" FT mRNA 3815..4378 FT CDS 3843..4337 FT /codon_start=1 FT /transl_table=1 FT /product="protein 4" FT /note="gene 4" FT /db_xref="UniProtKB/Swiss-Prot:Q68Y29" FT /protein_id="BAD36833.1" FT /translation="MDEENVDITEDELSVISDLELDSITRVVGTNEIKTYEDYKLEEAN FT YLKVLDIIKKFSTSDTCECYRCELFERGDIGKFLTRSEFSKLAVLYWERCGRPRNSEAL FT EAFIGRHICIRCAASILLSHHPVIAMRADMRLREIYIENGDKPASSSGTLFSAKGKGPR FT I" FT mRNA 4421..5723 FT CDS 4530..5636 FT /codon_start=1 FT /transl_table=1 FT /product="protein 5" FT /note="gene 5" FT /db_xref="UniProtKB/Swiss-Prot:Q68Y28" FT /protein_id="BAD36834.1" FT /translation="MAERCFEAAMTYMIPNKQSVEVFEGLLGILDPVLTSKHVRRVYQE FT ITVSFLMISLISDQVDSKGIVRMSDSQGDDDDSLSSLTWNSKNKLWGFLVNPVPITSSD FT LEKRLRISCMISSNAYRIGTNVAQVRFLLRIGTFPLVLSRELGFLCPSSSRFPSVIFVS FT PDKQTEMLRIISSYYSVGDTEEKNCWGILGERYLTTISEDISNLVVMAFPFLQGAFHCS FT SVYYLNFGCKMAAEGFHAIAREELRIALSNPVLWSDCPLKRVYDSLLQRIPTGVHISHS FT EEKGDPTFLPLAEYCSSHRECWICGDLKLGVDRGIGADFRHLSERRTSSPDGLDAVMSA FT VSRMIYHHWSIPSWVSGAFKIAKFIGAH" XX SQ Sequence 6081 BP; 1751 A; 1285 C; 1463 G; 1582 T; 0 other; tgcgagacgc aaaaatcata aaaaacttct actattttac cacccaacga tcttgaaagc 60 tcctcgcggc aaaataacat acaactgtac gtttcaaccg ttccgctatt ttccaggctg 120 ttcgcatttt cttttcccct acttcgacct tttccctatc tccctattcc cctatttcca 180 aagactttcg gattccatca ccctataaaa tggcacaccc caaattgaag atgctcgatg 240 cattcagtga cgtcgtggaa atcacaggaa agactgccgg gaaagaatcc tgggatgatg 300 aaagcacaat agctatgcca tcctataagc tttccgtact gtccgacgcc gatgctgttc 360 gtgaggtgaa gatcttcctg acagggctat ttgtgaggtc ctctccgagg gcgattgctg 420 cagctctcat catgacatgg aacatgaggt ctgttgatcc cgtggctgtc agaatattcc 480 ccgcaaagga caaggggaaa gacacagcgg atgtggatgt caagaatctg gaggtgcccg 540 gggtcgacta catagacgca atggtagaga ccaatgtgaa ggatgcttct gatatagaaa 600 ttattagagc cggagcattc atcgctgcct ccacgctcaa gatgttcgca aagtccttca 660 ctggatggac tcaggcttgg gaacacaagc atatccaaaa aaggtatgct gatttctgta 720 agaccgagta tccattcaag gaattcacga caaacaacaa gtgcgcagag accatgtacg 780 aggcctatca gggtcaaaaa ctgtatcaag gaactctagg cagaatcctc tatgctctgg 840 gagatgtggc agatccaagg cagactgaga tgttgtttga tcaacatctt gccaacactg 900 gcatgcacat catcccccag ttcacaaatg ctcaactctc gatcggtgcc accacggcgg 960 ggttactaag tgccctcaac tacggacaga acttcggcac tctaatgcag ctcaaaaagc 1020 tcatcaacga gagtctcagc aaaccaccgg gtccagacaa cagagcaacc tggagattcg 1080 ccaggatctt tgatccatct gtctttcaaa ccctccagac aaaatactgt gcagataccg 1140 ttgccatctt ggcaaacatc aattccatgg gaaagctatc cacagagact agcaatcctc 1200 tgaacattgc tgtgctaaag cagatggccc cggagaggaa gaggtacacg agacaggtgg 1260 cgaagaacat ctaccatcac ttcatggtgg ttgccagagc tctgaacaac gacatgttcg 1320 acacagacaa atacaagttt gtagagtccg acgatgagga ggaacatgtc gcaaatgagg 1380 gagagacacc agtgaaggag tgatgaggga tcctactatc atatgtaaaa aaacgagaaa 1440 gacaactata ggtactaaac taagagagaa attgagacga ttatctttga caatgacagg 1500 aaggtttgtt agagatcagt cagctatgac aaaggccatt gcatcatctg gtaaggcagg 1560 tcaggaaact accaaacaga ccacaagtgc ggaaaagtta gagagtgaaa atgcattact 1620 atccactgta aaggagatga accagggatg gatgtctcgt ctaggtgcag gcaatgatta 1680 tgatgagact gaggcagacc ccgctgatac atatggagat acagaagctg atctgcctcc 1740 aactataaaa ccggagcata tcaagaaaga aactcgcaaa caagacaagg ctcttggaat 1800 caagaatgtg gcggggactt cggagtctga aagaaaagct cttaagcaat gggatgagga 1860 tgaaaacaag agtgatacag agaagctggc cttcttggca ggattcaggt accgtcaaga 1920 tcacaactct gtagtactac gtgcacagac cgagcagttg aagtcccttg tggatatcct 1980 gacctcgtct gcaacctctg tgtcaagagc cgcttctgat attgtaaatg caaccacgat 2040 gtcgacttcc aagttggctg ctgcaatcac caaacacatc gaagttcctc cccatgagac 2100 attgaccaag atagagatgc caaaacttcc tcttatcagc tcagaagctg ggtctatatc 2160 tggagtgaag agtgttgatg gaaagtcggt cgatgaagaa ataattgaca gcaacaagaa 2220 ggagagcact aggatcaagg aggaggcaaa gactccaaag cctcaaatag tcacccctcc 2280 tgttatcgat agtggaccta tcataacagt tggacaaatg gcaagtgttc ttggggggga 2340 ggttaaggat atcttagagt tctacgagat cggaatggag aagtttgagt ctgtagctaa 2400 ggacttggga ctctcttatg aaggtcttct caggaaatac gggggcctct ctggattgaa 2460 aggaacattg aagaagaaga tcaacctgct gtgaaaatcc tctgaaaagg aatcctaaga 2520 tgaatgttcg tttctgtacc tctgtaccat gctgtcgtca ataagtaaaa aaacgagaat 2580 ataagtcaat atttgtcaaa gtccaattct gatatcatgt ctttgaaatc tgctccttac 2640 ctatctgaaa tctcggtctc taatggtgac tccgggattg gatttgatgg aggatgtgct 2700 gatccttatg ctccgtcccg ggtgccctct cgtcgttggg attactccac caaatgggat 2760 atgaagataa ccggggcagc gagagaattc aacctgtcca aacagcctgt tctcacgggg 2820 ctcatcaaca gcatgaggat gaagacatct ctcactcatc ccgagattca cgtggtgtgg 2880 agagggttgg ttcctcctgc tgtctgcaga gacgatgtgg tcgtgactct caggttcacc 2940 ccggatagaa gtgagaagat gggtttgatt gcccaacata ctcatggaat gcatctctat 3000 atgcatcatg tgttctatcc cagccacagc ataagggtgg gtcctggaga accacttccc 3060 tgggccgttg gattctctgt tccggacttc tcgttagacc ccaattacac aattgccgaa 3120 gtgcatgttc gcctcacggg gtatttctct gagcttcctg agtacgatat tcagcgagac 3180 tctgagttga tctccattgt ccctatggaa gagcatgtaa caggatatgc cacttctgcc 3240 cctaggatcc ccaacactgc ttgggtggcc cgaggataca agataggagt taatgggaac 3300 agtctagcaa agaagatcaa attcctgcag gagatcgggg tggatataga ggctctcaga 3360 atggtgggcc agctagataa caccctgaag aaggtgagtc cacgtgctat agatggatca 3420 ccatctgcag aggcgaagag tgaagctgcc cgccttgtga atgctcatgt taagaccctc 3480 actgcttgac aggaggctca gagagacaat aagagatttg agatgaggat tgactcctta 3540 gtcaataaat tggatagcta cacaagactg gctcgttggt tcttgttgtc gcttcctgga 3600 ataataggag ctcttcatta tttcttccat tacgtgtctt ctctgtgata ctgattgtgt 3660 gatctttcct gttacttgtc tagatggtgt tagatgttag agtctgtggt ttgtgataga 3720 agttatattt ccaattctgt attagattgt ttgttaaaaa ttagaaggcc atcgtttgtt 3780 tgtgtcatag taatcggcct atatgtaaaa aaacgagagt gtaagctaat cataactatt 3840 agatggacga ggaaaatgtc gacataactg aggatgaact ttctgtcatt tccgacctag 3900 agttggattc aattactcgg gtggtaggca caaacgaaat taagacctac gaggactaca 3960 agctggagga agccaactat cttaaggtct tggatatcat taagaagttc tctacttcag 4020 acacctgtga gtgttacaga tgtgagctgt tcgagagagg agatatcgga aaatttctga 4080 cgaggtctga gttctccaaa ctagcagtcc tctattggga gagatgtgga cgccctagaa 4140 actcggaagc tttggaggca tttataggaa ggcacatctg tataagatgt gcagcctcaa 4200 tccttctgag ccatcatccc gtgatcgcca tgagggcgga tatgagactt cgggagatat 4260 atatagagaa cggagataaa cctgcatctt cttcggggac attgttctcc gccaagggga 4320 agggacctag aatctaatgt cctgaaccat ttttgcaatt taaaagtatt agaaaaaacg 4380 gttctaaagc agtacatctc atatcattgc agaagaacgt gagagccata ttcgccttct 4440 cataatatat cttatgctct gcaagtctac cgaatccgat atctgtaacg caccaggtat 4500 tcaaacattc aagctcttgt gaattcaata tggctgagag atgcttcgaa gctgccatga 4560 catacatgat cccaaacaag cagagtgtgg aggtctttga aggtcttcta ggaatattgg 4620 atcctgtcct aacttctaaa catgtgcgga gggtgtacca ggagataaca gtatcctttc 4680 tcatgatatc tctaatttcc gatcaggttg actccaaggg gatcgtgaga atgtcagata 4740 gtcaggggga tgatgatgac tcattgagct cattgacctg gaattctaag aataaactct 4800 ggggatttct agtaaatccg gtccctatca cctcgagtga tctggagaaa cgactaagaa 4860 tctcctgtat gatcagctcc aatgcttaca gaattggtac aaatgtggcc caggtcagat 4920 ttctgctcag gattgggaca tttcctcttg ttctcagcag agaactggga ttcttatgtc 4980 cttcctcttc tcggtttcca agtgtgatat ttgtatctcc tgacaagcag acggagatgc 5040 tcaggataat ctcttcttat tactctgtcg gggatactga ggagaaaaac tgctggggga 5100 tattgggaga gagatatctt acaaccatat cagaggatat ttctaatctg gttgtcatgg 5160 cctttccctt cttgcaggga gctttccact gctcctctgt ctattatctg aattttggat 5220 gtaagatggc agcagaggga tttcatgcca tagcccgaga agaactcaga atcgctctga 5280 gcaatccggt cctgtggagc gattgtcctc tgaaaagggt atacgattcc ctcttgcaga 5340 gaattccaac aggcgttcat atcagtcact cggaagaaaa gggtgatccc acatttttgc 5400 cattagcaga atattgtagc agtcataggg aatgttggat ctgtggagat cttaagctcg 5460 gtgtagatag gggaataggg gcagatttca gacatctgtc agaaagaagg acatcctctc 5520 cagatggttt ggatgctgtg atgagtgctg tctctagaat gatatatcat cattggagca 5580 tcccatcctg ggtctctggg gcatttaaga ttgcaaagtt cataggagct cattaatctc 5640 acattcatat gctcttgaac actatatctc ccatcttttg tctacaatta aataagggag 5700 agctttcatc ttattagaaa aaacgatgtc ccattttttg ctcagcccga tgggatatga 5760 agatctgtgt acataggtgg atctggaaca agccgccatc tttttattcc taaggtatgc 5820 gaaagggacg gatgaaagag agcgtgagat cttccaccaa cttaaggcac ttatcggagg 5880 taaaagtcat atggtgtcct ggaatgagaa gtatggaaaa aatcggatcc tgtgaacatt 5940 gtgaaaaata aaaaaagaag atttccggga atgttaaaac gttggagtct accagcccgc 6000 taaagcaagt tgagttctaa caaagccgtg ttagtcgggg tcttgatttt gatgattttg 6060 ttgtgctgtg tttgcgacgc c 6081 //