Dbfetch
ID AB113347; SV 1; linear; genomic RNA; STD; VRL; 2299 BP. XX AC AB113347; XX DT 07-MAY-2005 (Rel. 83, Created) DT 27-JAN-2009 (Rel. 99, Last updated, Version 3) XX DE Rosellinia necatrix partitivirus 1-W8 genomic RNA segment 1, complete DE genome. XX KW . XX OS Rosellinia necatrix partitivirus 1-W8 OC Viruses; Riboviria; Partitiviridae; Betapartitivirus. XX RN [1] RP 1-2299 RA Sasaki A., Yoshida K.; RT ; RL Submitted (26-JUN-2003) to the INSDC. RL Contact:Atsuko Sasaki National institute of Fruit tree Science, Nationa RL Agricultural Research Organization, Independent Administrative RL Institution, Lab. Plant Protection; Fujimoto 2, Tsukuba, Ibaragi 305-8605, RL Japan XX RN [2] RX DOI; 10.1007/s00705-005-0494-0. RX PUBMED; 15750865. RA Sasaki A., Miyanishi M., Ozaki K., Onoue M., Yoshida K.; RT "Molecular characterization of a partitivirus from the plant pathogenic RT ascomycete Rosellinia necatrix"; RL Arch. Virol. 150(6):1069-1083(2005). XX DR MD5; 7bc77ba62b0a0285ad4744fd3df83447. DR EuropePMC; PMC4886788; 27030271. XX FH Key Location/Qualifiers FH FT source 1..2299 FT /organism="Rosellinia necatrix partitivirus 1-W8" FT /segment="1" FT /host="Rosellinia necatrix isolate W8" FT /mol_type="genomic RNA" FT /country="Japan:Okayama" FT /isolation_source="diseased root of grapevine" FT /note="Attached polyA tail in 3' terminal is variable size FT (19-51 bases)" FT /note="acronym:RnW8V-M" FT /db_xref="taxon:235994" FT CDS 76..2205 FT /codon_start=1 FT /transl_table=1 FT /gene="RnPV1-W8 RdRp" FT /product="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:Q50LH7" FT /db_xref="UniProtKB/TrEMBL:Q50LH7" FT /protein_id="BAD98237.1" FT /translation="MVLTIIRDYLHEAQLRLKKEWQTFQKSDQESGYSDKLPTDYDLRR FT YYDSARDYDAEKHKTEEYQHNFALTHERYTQMNADRNEPFEFYRPLEDNELPDIRFPAP FT GITVLPFRYHTGQIVETTDELPDSGFSLHPLIDYLTKTKWLHYRPYIDKYCRPLGTTNA FT TFSDFNREQIPSAPIDETRKNMVLPLVIYFLNALPFLPIHFVDTRFCGTPKHTATGYFQ FT RFSTFFRTHAYYARNKLYALRPTSKGYFFNTVYEFSRTWMHHIKEHGYPFVPSHDALDN FT ARQYRIFMQKHVTMLFTRNHISDRDGFLKQRPVYAVDDFFILCELMISFPLHVMARYPI FT NGIKSCIMYSFETIRGSNRYLDSIARDFISFFTIDWSSFDQRVPRVITDIFWTDFLRQL FT IVINHGYQPTYEYPAYPDLSEHDLYKRMNNLLHFLHTWYNNMVFVTADGFAYLRSAAGV FT PSGLLNTQYLDSFCNLFLIIDGLFEFGFTQAEILSIVFFIMGDDNSGFTMMDIERLTQF FT IEFFESYALKRYNMVLSKTKSVITTLRSRIETLSYQCNGGNPKRPLGKLIAQLCYPEHG FT PKDKYMSARAIGIAYAAAAMDEEFHEFCRDIYHTFLPYAAPIDEHTLSMATKHLPGYFK FT MLDNIASEIKFDSFPTLEMVQDKYSRWQGYLSHKPKWNDAHFKFLPETVPNNIKTMTDY FT QLEHKLDTPVPHSLF" XX SQ Sequence 2299 BP; 644 A; 696 C; 346 G; 613 T; 0 other; agaattcgtt ctaggccccc cctgtctaca cgaaagcaac ccgctccaac cttctaattt 60 cctctcgcat acaaaatggt tctcaccatc atccgcgact atctacacga ggctcaactc 120 cgccttaaga aagaatggca aacttttcag aaatctgatc aagaatcagg ctactccgac 180 aagcttccaa ccgactacga ccttcgccgc tactacgact ccgcacgcga ctacgacgct 240 gaaaaacaca aaaccgaaga atatcaacac aacttcgccc tgactcatga acgctatacg 300 caaatgaacg ctgaccgaaa cgaacccttc gaattttacc gtccccttga agacaacgaa 360 cttccagaca tccgcttccc tgcacctggc ataaccgttc ttcccttccg ctaccacact 420 ggacaaatag ttgaaacaac tgacgaactc cccgactccg gtttctcact ccatcctctc 480 atcgattatc tcaccaaaac gaaatggcta cactatcgcc catacattga caaatactgt 540 cgacctcttg gcacaactaa cgctactttc tccgacttta atcgcgaaca gataccctcc 600 gcccctattg atgaaacacg caagaacatg gtccttccac tcgttatcta tttccttaac 660 gctttacctt ttcttcctat tcactttgtt gacacacgct tctgcggcac acccaaacat 720 accgcaacag gatatttcca acgcttctca acattcttca gaacccacgc ttactacgca 780 cgaaacaagc tctacgcttt aagacccacg tctaaaggct acttctttaa cactgtttat 840 gaattttcac gaacatggat gcatcacatc aaagaacatg gctacccctt cgtcccttct 900 catgacgcac tcgacaacgc tcgacaatac cgcatcttca tgcagaaaca tgtaactatg 960 ctttttactc gtaatcacat ctcagatcga gacggcttcc tcaaacaacg ccccgtctat 1020 gcagtcgatg actttttcat tctctgtgaa cttatgatct cattcccact acatgtgatg 1080 gctagatacc caatcaatgg aatcaaatcc tgtattatgt acagcttcga aacgatccgt 1140 ggctcaaacc gctacctgga ctctatcgca agagatttca tctccttctt cacgattgac 1200 tggtcttcct tcgaccaacg cgtcccccgt gtcataacag acattttctg gaccgacttc 1260 cttagacaac ttattgtcat caatcacgga tatcaaccta cttacgaata ccccgcttat 1320 cccgaccttt ccgaacacga tctctacaaa cgtatgaaca accttcttca tttcttacat 1380 acctggtaca acaacatggt ttttgtaaca gctgatggtt ttgcatatct tcgatctgct 1440 gctggtgtcc cctccggact actgaacact cagtatctcg attccttctg caacctattc 1500 ctcatcattg atggactatt tgaatttggc ttcacccaag ctgaaatcct ttcaatagtt 1560 ttcttcataa tgggagacga caactcaggt ttcactatga tggacatcga acgactaacc 1620 caattcattg agtttttcga atcctacgca ctcaaacggt acaacatggt cctttccaag 1680 accaaatcgg tgataactac actccgatcc cgcatcgaga ccctttccta ccaatgtaat 1740 ggtggcaatc ctaaacgccc acttggcaaa ttgattgctc aactctgtta cccggaacac 1800 ggtcccaagg acaaatacat gtccgcacgc gcaattggaa tcgcctacgc cgccgccgct 1860 atggatgaag aattccacga attctgtcgt gatatctatc acacattcct gccctacgca 1920 gccccaatcg acgaacacac gctctcaatg gcaaccaaac acctacctgg ttactttaag 1980 atgcttgata acatcgcttc cgaaatcaaa ttcgactcat ttccaaccct cgaaatggta 2040 caagacaagt actctcgctg gcaaggatac ctatcccaca agccgaaatg gaacgacgca 2100 cacttcaagt ttctacccga gactgttccc aacaacatca agactatgac tgactatcaa 2160 ctcgaacaca aactggacac accagtacca cattcgttat tttgaactgt caacccaatg 2220 gttttacttt cccgtttttg tttattttta tgaacgcaag ttcatttaat tatttacttt 2280 acacgctttg tttaatcct 2299 //