ID AB100304; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC AB100304; XX DT 21-JAN-2003 (Rel. 74, Created) DT 29-APR-2009 (Rel. 100, Last updated, Version 6) XX DE Tomato leaf curl Java virus DNA, complete genome. XX KW . XX OS Tomato leaf curl Java virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RA Ikegami M.; RT ; RL Submitted (17-JAN-2003) to the INSDC. RL Contact:Masato Ikegami Graduate School of Tohoku University, Department of RL Life Science; 1-1 Tsutsumidori-Amamiyamachi, Aobaku, Sendai 981-8555, Japan XX RN [2] RX DOI; 10.1094/PHYTO-96-0517. RX PUBMED; 18944312. RA Kon T., Hidayat S.H., Hase S., Takahashi H., Ikegami M.; RT "The Natural Occurrence of Two Distinct Begomoviruses Associated with RT DNAbeta and a Recombinant DNA in a Tomato Plant from Indonesia"; RL Phytopathology 96(5):517-525(2006). XX DR MD5; bb8a56b6cf571514282cc6161712ec2a. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Tomato leaf curl Java virus" FT /lab_host="Nicotiana benthamiana" FT /mol_type="genomic DNA" FT /country="Indonesia" FT /isolation_source="Tomato" FT /clone="pToX1" FT /db_xref="taxon:263001" FT CDS 137..487 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /db_xref="GOA:Q80S74" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q80S74" FT /protein_id="BAC55588.1" FT /translation="MWDPLVNEFPETVHGLRCMLAVKYLQLVEATYSPDTIGYDLVRDL FT ISVIRARNYVEASRRYSHFHSRLEGTSSSELRHTRDEPCCCPHCPRHQQKKDMDQQAHV FT SQAQNVQNVQKP" FT CDS 297..1070 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q80S73" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q80S73" FT /protein_id="BAC55589.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDTPAMSRAAAPTVLVTNKRRTW FT TNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVSHVGKVCCITDVTRGLGLTH FT RTGKRFCVKSVYIMGKVWMDENIKTKNHTNTVMFFLVRDRRPYSSPQDFGQVFNMYDNE FT PSTATVKNDMRDRFQVLRKFTSTVTGGQYACKEQSLVKRFFRVNNHVVYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT CDS complement(1067..1471) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:Q80S72" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q80S72" FT /protein_id="BAC55590.1" FT /translation="MDLRTGELLTATQCESGVYTWTIKNPLYFKIIKHHERIFNTNHDV FT ITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINN FT VIRACDHVLWDVLENTEYVTQSHIIKFNLY" FT CDS complement(1212..1619) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:Q80S71" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q80S71" FT /protein_id="BAC55591.1" FT /translation="MQNSSPSTAHCTQVPIKVQHRIAKRRPVRRRRIDLTCGCSYYFGI FT DCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRENIQHQPRRHNDPNTVQSQ FT PEESVGNTPVFSDLPDLDSLTTSDLAFLKSI" FT CDS complement(1525..2607) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication initiation protein" FT /note="Rep" FT /db_xref="GOA:Q80S70" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q80S70" FT /protein_id="BAC55592.1" FT /translation="MAPPKRFLINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQVDGRSARGGQQTANDTAAKALNSGSAEAALAIIREELPKDFIFQYH FT NIKANLDRIFTPRAEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFVTLNSPL FT YSGTNQSATQNSQEEASSQA" FT CDS complement(2193..2456) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q80S69" FT /protein_id="BAC55593.1" FT /translation="MKMGALICTCLSSSKGNSSAKITDSSTLHPLPGQHISIRTFRELN FT QAPTSSLISTRTETHWNGENSRSTEEVLEEVNRRLTTQLQRP" XX SQ Sequence 2752 BP; 735 A; 576 C; 593 G; 848 T; 0 other; taatattacc ggatggccgc gattttttta aagtgtcccc cccactaaca aatgtccccc 60 aatcagaacg cgccctcaaa gctaaattat taactggtcc cctatttata cttagtctcc 120 aagtattatg ttaaacatgt gggatcccct cgtaaacgaa ttcccagaga ctgttcacgg 180 tctacggtgt atgctagccg taaaatatct tcaattagtt gaagctacgt attctcctga 240 tacgattggg tacgatcttg tacgcgattt aatttcagta attcgtgctc gcaattatgt 300 cgaagcgtcc cgccgatata gtcatttcca ctcccgcctc gaaggtacgt cgtcgtctga 360 acttcgacac acccgcgatg agccgtgctg ctgcccccac tgtcctcgtc accaacaaaa 420 gaaggacatg gaccaacagg cccatgtatc gcaagcccag aatgtacaga atgtacagaa 480 gccctgatgt gcccaaaggt tgtgaaggcc catgtaaggt ccagtctttt gagtctagac 540 acgatgttag tcacgtgggt aaggtctgtt gtataactga cgtcactagg ggtttaggtt 600 tgacacatag gacgggtaag aggttttgcg ttaagtccgt ctacataatg ggcaaggtct 660 ggatggatga gaatatcaag accaagaatc acactaacac agttatgttt tttctagtcc 720 gtgatcgaag accttattca agtcctcagg attttggtca ggtgtttaac atgtatgaca 780 atgagccaag tacagctact gtcaagaacg atatgcgaga tcgttttcag gtcttacgga 840 aattcacatc aactgttact ggtggtcagt atgcatgcaa ggagcagtct ctcgtcaaac 900 gtttttttag agttaataat catgtagttt ataatcatca agaggcggga aagtatgaga 960 accatactga gaacgctctt ttattatata tggcttgtac tcatgccagt aacccagtgt 1020 atgctacttt gaaaatcaga atctatttct atgattctgt tcaaaattaa taaagattaa 1080 attttattat atgagattgt gttacatatt ctgtgttttc caatacatcc cataaaacat 1140 gatcacatgc tctaattaca ttgttaatac taattacacc caaattatct aaatatttca 1200 tacattgaac cctaaatact cttaagaaac gccaagtctg aggttgtaag cgagtccaga 1260 tctggaagat cagaaaacac tggtgtattc ccaacgcttt cctcaggttg tgattgaact 1320 gtattcggat cgttatgacg tcgtggttgg tgttgaatat tctctcgtgg tgcttgatta 1380 tcttgaaata gaggggattt ttgatcgtcc aggtatacac gccactctcg cattgagttg 1440 cagtgagtaa ttcccctgtg cgtaaatcca tgatttgcac agtctattcc gaagtagtaa 1500 gaacacccgc acgttagatc aattctacgc ctgcgaactg gcctcctctt ggctattctg 1560 tgttgcactt tgattggtac ctgagtacaa tgggctgttg agggtgacga attctgcatt 1620 ctttatagcc cactctttta atgccgaatt cttctcttcg tccaagtact ctttatatga 1680 tgatgttggg cctggattgc aaaggaagat agttgggatt ccacctttaa tttgaattgg 1740 tttcccgtac ttggtgttgc tttgccagtc cctttgggcc cccatgaatt ctttaaagtg 1800 ctttaagtag tgggggtcga cgtcatcaat gacgttgtac caggcatcat tgctgtatac 1860 ctttgggctc agatctaaat gaccgcacaa ataattatgt gggcctaaag aacgagccca 1920 catcgtcttc cctgtacggc tctcaccctc tatgacaata ctaacaggtc tccatggccg 1980 cgcagcggca tcccttacgt tttcggaaac ccagcactca agttcttctg gaacttgatc 2040 gaaagaagaa gaaagaaatg gacaaacaaa aacctctgca cgaggtgtaa aaatcctatc 2100 taaattagct ttaatattat gatattgaaa aataaaatct ttagggagct cctctctaat 2160 aatagctaaa gctgcttcgg ctgaacctga atttagggcc tttgcagctg tgtcgttagc 2220 cgtctgttga cctcctcgag cacttcttcc gtcgacctgg aattctcccc attccagtgt 2280 gtctccgtcc ttgtcgatat aagacttgac gtcggagctt gatttagctc cctgaatgtt 2340 cggatggaaa tgtgctgacc tggtagggga tgtaaggtcg aagaatctgt tattttggca 2400 cttgaatttc ccttcgaact ggataagcac gtgcagatga gggctcccat cttcatggag 2460 ttctctgcag attttgatga attttttatt tgttggggtg tttaggtttt gtaattggga 2520 aagtgcttct tctttagtga gagagcactg tgggtatgtg aggaaataat ttttggcatt 2580 tattaaaaaa cgtttgggag gtgccatttg acttggtcaa tcgggtctca acaaacttgc 2640 gttagcaatc ggggaatggg tctcaatata tagtgaggac ctaaatggca ttattgtaat 2700 tctcgaaagt aattcaaatt tcaaattttg aatccaatag cggccatccg ta 2752 //