ID AB089381; SV 1; linear; genomic RNA; STD; VRL; 6524 BP. XX AC AB089381; XX DT 11-AUG-2002 (Rel. 72, Created) DT 21-JUN-2008 (Rel. 96, Last updated, Version 6) XX DE Paprika mild mottle virus complete genome, strain:Japanese. XX KW . XX OS Paprika mild mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6524 RA Hamada H., Takeuchi S., Morita Y., Sawada H., Matsumoto K., Kiba A., RA Hikichi Y.; RT ; RL Submitted (05-AUG-2002) to the INSDC. RL Contact:Yasufumi Hikichi Kochi University, Faculty of Agriculture; Monobe RL B200, Nankoku, Kochi 783-8502, Japan XX RN [2] RA Hamada H., Takeuchi S., Morita Y., Sawada H., Kiba A., Hikichi Y.; RT "Characterization of Paprika mild mottle virus first isolated in Japan"; RL J. Gen. Plant Pathol. 69:199-204(2003). XX DR MD5; 8a052edcd8721b09246101a78350944d. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6524 FT /organism="Paprika mild mottle virus" FT /strain="Japanese" FT /mol_type="genomic RNA" FT /db_xref="taxon:35281" FT CDS 69..4919 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3414..3416,aa:OTHER) FT /product="183kDa protein" FT /note="position 3414..3416 is readthrough product" FT /db_xref="GOA:Q8JVK7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8JVK7" FT /protein_id="BAC07266.1" FT /translation="MAHLQQSMQGALLDTIRGQNSLVNDLAKRKLYDTAVEELNAKDRR FT PKVNFSKTINEEQTLVVSQAYPEFQITFYNTQLAVHSLAAGLRTLELEYLMMQIPYGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDLRDIMRHENQKDSVATYISRLKARNKVIPAFQ FT QDAFQRYAERSDEVVCSDTFQCCTSNRYHSGNRVYAIALHSLYDIPADELGAALLRKDV FT HTLYAAFHFAEELLLEASTVELPAIGGIFSRDGDRLDFCFSNESTLNYSHSYSNLLKYV FT CKTYFPASSRYVYMKEFLVTRVNTWFCKFTKLDTYTLYRGVYHRGCDQNEFYAAMEDAW FT HYKKTLAMLNTERIVLEDKSSVNYWFPKMRDMVIVPLFDVSLETQRRTRKEVLVNKDFV FT FTVLNHIRTYQAKALTYNNVLSFVESIRSRVIINGVTARSEWDVDKSLIQSLSMTFFLI FT TKLSVLKDELLTSKFTLSTKSLNEHVWDEIKSACGSIFPSLKETLLRRKMISSSADKLE FT IKVPDTYVTFHDRFVSEYKSSVEMPTIDISKDLSEAECFYSALSELSVLENSKDFDLEK FT FSRMCALNSVNPEVAAKVIVAVLSNESGVTLPFKEPTEGNIAEALKPNGRDEVLTLENV FT TENTDLTCKSMVSSGSLPLCGISGEIACDTFVRNEEINSLEEYHMLAAESVINNRMASI FT VYSGPLQVQQMQNYVDSLVASLSATVSNLKKLVKDSSVGFQDALSKVGVFDARMKRWLI FT KPTLKNHSWGVVQKFDGKCFLAILSYDNENPICDADWCKVAVSNESMVYSDMAKLRVLK FT GSMGDKPPHVSSAKVTLVDGVPGCGKTKEILRRVNFDEDLVLVPGKEAAAMIRKRANQC FT GNTVANNNNVKTVDSFLMNLGKGPRNHFKRLFIDEGLMLHPGCVYFLVTLSLCDEAFVF FT GDTQQIPYINRVQNFPFPKHFSKLIVDETEKRRTTLRCPVDVTHFLNQRYEGAVTTTST FT TTRSVGVDVVNGAATMNPVTRPLKGKIITFTQSDKITLASRGYENVNTVHEIQGETYDD FT VCLVRLTPTPIHIIARDSPHVLVGLTRHTKTFKYYTVVLDPLVKIVRDLECVSNFLLDV FT YMVDSVNAXQLQVGSVYMSESLFVQAPKSGDIQDMQFYYDKCLPGNSTVLNDFDAVTIN FT NADISLNVKDCTLDFSKSVPLPKDKLQSPLTPVIRTAAEKPRQSGLLENLVAMIKRNFN FT SPELSGIVDIENTASVVVDRFFDSYFLKDKISSCSLGDSGGKNIIDRQALIRWMEKQEK FT STIGQLADFDFIDLPAIDQYRHIIKSQPKQKLDLSIQSEYPSLQTIVYHSKKINALFGP FT IFSELTRQMLSAIDSSRFLFFTRRTPEQIEEFFSDLDTSQPMEVLELDISKYDKSQNEF FT HCAVEYEIWRRLGIDDFLAEVWKQGHRRTTLKDFTSGIKTCLWYQRKSGDVTTFIGNTV FT IIAACLASMLPMEKVIKAAFCGDDSLVYLPKGCELPDIQSCANLMWNFEAKLFKKTYGY FT FCGRYVIHHDRGAIVYVDPLKIISKLGAKHITDREHLEEFRVSLADVSKSLNNCAYYTQ FT LDEAVREVHRTAPPGAFVYKCIVKFLSDKVLFKSLFL" FT CDS 69..3416 FT /codon_start=1 FT /transl_table=1 FT /product="126kDa protein" FT /db_xref="GOA:Q8JVK6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8JVK6" FT /protein_id="BAC07267.1" FT /translation="MAHLQQSMQGALLDTIRGQNSLVNDLAKRKLYDTAVEELNAKDRR FT PKVNFSKTINEEQTLVVSQAYPEFQITFYNTQLAVHSLAAGLRTLELEYLMMQIPYGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDLRDIMRHENQKDSVATYISRLKARNKVIPAFQ FT QDAFQRYAERSDEVVCSDTFQCCTSNRYHSGNRVYAIALHSLYDIPADELGAALLRKDV FT HTLYAAFHFAEELLLEASTVELPAIGGIFSRDGDRLDFCFSNESTLNYSHSYSNLLKYV FT CKTYFPASSRYVYMKEFLVTRVNTWFCKFTKLDTYTLYRGVYHRGCDQNEFYAAMEDAW FT HYKKTLAMLNTERIVLEDKSSVNYWFPKMRDMVIVPLFDVSLETQRRTRKEVLVNKDFV FT FTVLNHIRTYQAKALTYNNVLSFVESIRSRVIINGVTARSEWDVDKSLIQSLSMTFFLI FT TKLSVLKDELLTSKFTLSTKSLNEHVWDEIKSACGSIFPSLKETLLRRKMISSSADKLE FT IKVPDTYVTFHDRFVSEYKSSVEMPTIDISKDLSEAECFYSALSELSVLENSKDFDLEK FT FSRMCALNSVNPEVAAKVIVAVLSNESGVTLPFKEPTEGNIAEALKPNGRDEVLTLENV FT TENTDLTCKSMVSSGSLPLCGISGEIACDTFVRNEEINSLEEYHMLAAESVINNRMASI FT VYSGPLQVQQMQNYVDSLVASLSATVSNLKKLVKDSSVGFQDALSKVGVFDARMKRWLI FT KPTLKNHSWGVVQKFDGKCFLAILSYDNENPICDADWCKVAVSNESMVYSDMAKLRVLK FT GSMGDKPPHVSSAKVTLVDGVPGCGKTKEILRRVNFDEDLVLVPGKEAAAMIRKRANQC FT GNTVANNNNVKTVDSFLMNLGKGPRNHFKRLFIDEGLMLHPGCVYFLVTLSLCDEAFVF FT GDTQQIPYINRVQNFPFPKHFSKLIVDETEKRRTTLRCPVDVTHFLNQRYEGAVTTTST FT TTRSVGVDVVNGAATMNPVTRPLKGKIITFTQSDKITLASRGYENVNTVHEIQGETYDD FT VCLVRLTPTPIHIIARDSPHVLVGLTRHTKTFKYYTVVLDPLVKIVRDLECVSNFLLDV FT YMVDSVNA" FT CDS 4936..5745 FT /codon_start=1 FT /transl_table=1 FT /product="30kDa protein" FT /db_xref="GOA:Q8JVK5" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q8JVK5" FT /protein_id="BAC07268.1" FT /translation="MSSKSIVNIEEFINMSKAEEVLPAALTRMKSVRISTVDKIMATDN FT DNISEVDLLKGVKLIKNGYVCLVGLVVSGEWNLPDNCRGGVSVCLIDKRMQRHNEATLG FT SYTAKASKKNFSFKLIPNYSITSQDAERRPWEVMVNIRGVAMEEGWCPLSLEFVSVCIV FT HKNNVRKGLREKVTTVSEDSAIELTEEVVDEFIEAVPMARRLQNFRKPKNNISKNFVNK FT GSSKPRNIPKLNEDKVFKLEKGLKGVKGMTNASRDDSSSEISSDSFN" FT CDS 5748..6233 FT /codon_start=1 FT /transl_table=1 FT /product="17kDa protein" FT /db_xref="GOA:Q8JVK4" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q8JVK4" FT /protein_id="BAC07269.1" FT /translation="MPYTVSSPNQLVYFGSVWADPIALIDLCTVSLGNQFQTQNARTTV FT QQQFSDLFKTVPTRTIRFSDGENGFRVFRYNSTLDPLITALLNSFDTRNRIIETENPAN FT PNTAEIASATQRVDDATVSIRACINNLMNELARGTGMLNTASFETVSNLTWTTAATT" XX SQ Sequence 6524 BP; 1946 A; 1179 C; 1504 G; 1895 T; 0 other; gtaaaattta tacaatacaa caacaacaat tttacaacaa caacaaacat ttacaactta 60 caattacaat ggcacattta caacaatcta tgcagggtgc gttgctagac acgataaggg 120 gacaaaactc tcttgtcaat gatctagcca agcgtaaact ttacgacacc gctgtcgaag 180 agttaaacgc caaagatagg aggccaaaag taaacttctc gaaaactatc aatgaagaac 240 aaacattggt agtttcacag gcctatccgg aattccaaat aacattttat aatacacaac 300 tggcggttca ttctcttgcc gccggtctgc gtacattaga attggaatat ctgatgatgc 360 aaattcccta tggttcattg acttatgata tagggggaaa ttttgcagcc catttgttca 420 aaggaagaga ttatgtacac tgttgcatgc ccaatctgga tctcagagat ataatgagac 480 atgaaaatca gaaggattca gttgcaacgt acatttccag actcaaggcc aggaataaag 540 ttatacctgc ttttcagcag gacgctttcc agaggtacgc cgaaaggtct gatgaggttg 600 tttgttcaga cactttccag tgctgcacaa gcaaccggta tcactccggt aatagagttt 660 atgcaatagc actacacagt ctttatgata tcccagctga tgagcttggt gccgcgttac 720 tgcggaagga tgtgcatact ctctatgctg cttttcactt tgccgaggaa cttcttcttg 780 aggcaagcac cgtggagcta cccgcaattg gcgggatttt ttctcgcgat ggtgatagat 840 tagatttttg tttttcgaat gagagcacct taaactatag tcatagttat agtaatcttc 900 ttaaatatgt ttgtaaaact tatttcccag cgtctagtag atatgtatat atgaaggaat 960 ttctagtaac tagggtaaat acttggtttt gcaaattcac taaactagat acttatactt 1020 tatacagggg agtttaccat agaggctgcg accaaaatga attttatgca gcaatggaag 1080 atgcatggca ctacaagaaa acgctcgcaa tgctcaacac tgaaagaata gtgcttgagg 1140 ataagtctag tgttaattac tggttcccta agatgagaga tatggtgata gtccctctct 1200 ttgacgtttc tttggaaact caaagaagga ctcggaagga agttctagtc aataaggact 1260 tcgttttcac agttcttaat cacatcagaa cctatcaggc caaagcactg acatacaata 1320 atgtgttatc cttcgtcgaa tcaattagat cgagggtaat cattaatggt gtcacagcga 1380 ggtcagaatg ggacgtggat aagtccttga tacaaagtct gtcaatgact ttcttcctaa 1440 tcaccaaact ctctgttctg aaggacgagt tattaacgtc taaatttacc ttgagcacta 1500 aaagtcttaa cgagcatgta tgggacgaga taaagagtgc atgtggaagt attttcccca 1560 gtctgaagga gacattgctg agaaggaaaa tgatcagtag ttcggctgat aaactggaga 1620 ttaaggttcc ggatacttat gtcactttcc atgacagatt cgtatctgaa tacaaatcct 1680 cagtcgagat gcccactatt gatattagca aagacctgtc tgaagcggaa tgtttctact 1740 ccgctctgtc tgaactatct gttctggaaa actctaaaga tttcgatctt gaaaagtttt 1800 ctagaatgtg tgctttaaat tctgtcaatc ctgaagtagc agcgaaggta attgtcgcgg 1860 ttctctccaa tgagagtggt gtgacgttac cattcaagga acctactgag ggtaacattg 1920 cagaggcgct aaagccgaat ggaagagatg aggtattgac tctggagaac gtcactgaga 1980 ataccgattt gacatgcaaa tcgatggttt cgagtggaag tttgccgctt tgcggaatct 2040 cgggcgagat tgcgtgcgac acatttgtga ggaatgagga gatcaacagc cttgaagagt 2100 atcacatgct cgcagccgaa tcagttatta ataacaggat ggcatcgatt gtctattcag 2160 gacctctaca agttcaacag atgcagaact atgtagacag cctggttgcc tctttgtcag 2220 ctactgtttc aaacctgaag aagctggtta aagattcaag cgttggtttc caagacgctc 2280 tctcaaaggt cggcgttttt gatgctcgga tgaagcgctg gttaataaaa ccgacactca 2340 aaaatcattc atggggggtg gtgcagaagt ttgacggtaa atgcttttta gcaatactgt 2400 cctacgacaa tgagaacccc atttgtgatg ctgattggtg taaggtggcg gtttccaatg 2460 agtcgatggt ttactctgac atggcaaagc tgagagtgct taaagggtcc atgggtgata 2520 aaccacccca tgtcagttct gcaaaggtta ctttggtaga cggcgtccct ggatgtggga 2580 aaactaaaga aattctcaga agagttaatt ttgatgagga tttagtatta gtaccaggaa 2640 aggaagctgc tgctatgatc aggaaaagag caaatcaatg cgggaatact gtagcgaaca 2700 ataataatgt taaaacggtt gattctttct tgatgaatct cgggaaaggt cctaggaatc 2760 atttcaagag gttattcata gacgaaggtt tgatgttgca tccaggctgt gtttactttt 2820 tagtaactct aagtctgtgt gatgaagcct ttgtctttgg agatacccag cagataccgt 2880 acattaatag agttcaaaac tttccatttc caaagcattt cagtaagttg atagttgatg 2940 agacagagaa gaggaggacg acgctgaggt gtccagtcga tgtaacacat tttctcaatc 3000 aacgctacga aggtgcagtc acaaccacct ctacgaccac caggtcggta ggagtggacg 3060 tggttaacgg cgcagcgacg atgaatccag ttacaagacc tcttaaaggg aaaatcataa 3120 cttttactca gagcgataaa atcacacttg ctagtagagg ttatgagaat gtcaacacag 3180 tgcatgagat tcaaggagaa acgtacgatg atgtgtgttt ggttaggctt acacctactc 3240 ctatacatat tatcgcgcga gatagtccgc atgttcttgt cgggctgacc aggcacacta 3300 aaacattcaa gtattatact gtagtacttg atccccttgt taaaatagtt agagatttag 3360 agtgtgttag caatttcctt ttagatgttt acatggttga tagtgttaac gcatagcaat 3420 tacaggtagg tagtgtgtat atgtccgaaa gtctttttgt tcaagctccc aaatcaggag 3480 atattcaaga tatgcagttc tattacgaca agtgtctgcc tggtaatagc acagtgttga 3540 atgatttcga cgctgtaact attaacaacg cagatatttc tcttaatgtt aaggactgca 3600 cacttgattt ttctaagtcg gtgccgctgc ccaaggataa acttcagtcg cctttgactc 3660 cggtcataag gacggctgct gaaaaaccta ggcaaagcgg tttactggaa aatttggtgg 3720 ctatgatcaa aagaaatttc aacagtccag agttatctgg aattgtagac atagaaaaca 3780 ctgcctcagt agtcgtggat aggttttttg atagttattt tcttaaagat aaaatctcca 3840 gttgcagctt aggcgattct ggggggaaaa atataataga taggcaagct ctcattcgct 3900 ggatggaaaa gcaagagaag tctactatag gtcaattagc cgattttgat tttatcgatt 3960 taccggctat tgatcaatat agacatatca ttaaatccca gccgaagcaa aaattggatt 4020 tatcgatcca aagtgagtat ccttcgttgc aaactatagt gtaccattcg aagaagatca 4080 atgcgctgtt cggaccgata ttctcggaat taacgcgcca gatgctatct gcaatagatt 4140 cttcgaggtt cctatttttt acaaggagaa ctccggaaca aattgaagag tttttttctg 4200 atttggatac tagtcaacct atggaagtgc tcgaactcga cataagtaaa tatgataaaa 4260 gtcaaaacga gttccattgc gctgtggagt atgagatttg gagacgttta ggaatagacg 4320 atttcctggc tgaagtgtgg aaacaaggac acaggagaac tactcttaaa gatttcacat 4380 ctgggataaa aacatgcttg tggtatcaaa gaaaaagcgg tgacgtcact acgttcattg 4440 gtaatacggt tattattgct gcctgtttgg catcaatgtt gccgatggaa aaggttatca 4500 aagcggcctt ctgcggtgat gatagtctag tctatttgcc gaagggatgt gagttaccag 4560 atatccagag ctgtgcaaat ttgatgtgga attttgaagc aaaattgttc aaaaagacat 4620 acggctattt ctgcggtcga tatgtcattc atcatgacag gggggctatt gtatacgtcg 4680 atcctctaaa gataatctct aagttaggtg ctaagcatat aacagatagg gagcatctgg 4740 aagagtttcg tgtttcactg gcagatgttt ctaagtcctt aaataattgt gcgtattaca 4800 cacagttaga tgaggcggtg cgggaagttc atagaactgc ccctccgggt gcgtttgttt 4860 ataagtgtat tgtaaaattt ttgagtgata aagtcttgtt taagtctctt tttctttagg 4920 tcgactgttt gagctatgtc ttccaagtct attgtcaata tcgaggagtt cattaacatg 4980 tcgaaagcgg aagaagtctt gccggctgca ttaacaagaa tgaagtcggt caggatttcg 5040 accgtcgaca agataatggc tactgataac gacaatatat cggaagtgga tttgcttaaa 5100 ggagtcaagt taattaagaa tggttatgtg tgtttagtgg gtctagtcgt gtcaggagag 5160 tggaacttac ccgataactg cagaggtggt gtaagtgtat gtctgatcga caagcgtatg 5220 caacgtcaca acgaagcaac gctagggtct tatactgcta aagctagtaa gaaaaacttt 5280 tctttcaaac tcatccctaa ttactccata acgtctcaag atgccgaaag gcgtccttgg 5340 gaggtgatgg tgaatataag aggtgtagcc atggaagaag gttggtgtcc gctctcttta 5400 gagtttgttt ctgtgtgtat tgttcataaa aacaatgtga gaaaaggttt acgagagaaa 5460 gtgactacag tgtcagagga cagcgctatt gaacttacag aggaagttgt tgatgagttc 5520 atagaggcag taccgatggc acgtcggttg caaaatttca ggaaacccaa aaataatatt 5580 agtaagaatt ttgttaataa aggttcttca aagccaagga acattccgaa gcttaacgaa 5640 gacaaagttt ttaagttaga aaaggggttg aaaggtgtta agggaatgac taatgcaagt 5700 cgtgatgata gctctagtga gatttcatct gattcgttta attaatcatg ccttatactg 5760 tatcttctcc caatcagctt gtttatttcg gttcggtttg ggccgatccc atcgctttaa 5820 tagatctgtg tactgtctcg ttgggtaatc agtttcaaac tcaaaacgct aggactactg 5880 ttcagcagca gttcagtgat ttgtttaaaa ctgtcccaac acggactatc agatttagtg 5940 acggtgagaa cggttttaga gtgtttaggt ataatagtac gctggatccg ttgatcacgg 6000 cgttattgaa ttcgtttgat actagaaata ggatcataga aactgaaaac ccggcaaatc 6060 ccaacacagc tgaaatagca tctgctactc agcgtgttga tgatgccacg gttagtatta 6120 gggcttgtat taataatctt atgaacgagc ttgcgcgtgg tacgggtatg ttaaatacgg 6180 cctccttcga gactgtttct aacttgacct ggactaccgc agctactaca taagtagctt 6240 aataggtaaa tgactatata tagtcagcgg tgtatgcttg atacacagtg tttatccctc 6300 cacttaaatc gaagggcggt tgtggtcatc actacattta tgtagtgcaa cttgaagaag 6360 atgaggtggt acataccaaa atgtacagtg gttttccctc cacttgaatc gaagggttgg 6420 ttgttggagt tttcacgtga gacgttggtg caacgtaact gcgtgtacaa ctgtaaaagt 6480 aaaaaggggt tcgaatcccc cctttacccc gggtatgggg ccca 6524 //