ID AB086951; SV 1; linear; genomic RNA; STD; VRL; 4048 BP. XX AC AB086951; XX DT 02-JUL-2003 (Rel. 76, Created) DT 03-DEC-2008 (Rel. 98, Last updated, Version 4) XX DE Pea stem necrosis virus DNA, complete genome. XX KW . XX OS Pea stem necrosis virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4048 RA Ikegami M.; RT ; RL Submitted (26-JUN-2002) to the INSDC. RL Contact:Masato Ikegami Graduate School of Tohoku University, Department of RL Life Science; 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, Miyagi RL 981-8555, Japan XX RN [2] RX DOI; 10.1159/000065870. RX PUBMED; 12403920. RA Suzuki S., Hase S., Takahashi T., Ikegami M.; RT "The genome organization of pea stem necrosis virus and its assignment to RT the genus Carmovirus"; RL Intervirology 45(3):160-163(2002). XX DR MD5; d82f47d861eea19507e811a605fe4474. XX FH Key Location/Qualifiers FH FT source 1..4048 FT /organism="Pea stem necrosis virus" FT /host="Pisum sativum" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:199361" FT CDS 135..2387 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:804..806,aa:OTHER) FT /gene="p84" FT /product="p84 product" FT /note="readthrough product" FT /db_xref="GOA:Q7T4K3" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q7T4K3" FT /protein_id="BAC78642.2" FT /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV FT LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI FT NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM FT SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV FT KXGCLEQLAGVCTKVHRGSHPDLVERAYGGRPKLRKMMRLGGLGTGAQFGVHNNSLRNL FT RRGLIERVFFVEDASKKLVPAPKPLSGVFEELNYFRSRLHAIVGLHSRVSEDAFLSFYS FT GRRRTIYEAAVKSLSELPVQRQDSFLKTFVKAEKINFTVKPDPAPRVIQPRNTRYNVEV FT GRYLRRYEHYLYRGIDKIFGGPTIIKGYTVEQIGGIVEEAWNRFDSPVAIGFDMKRFDQ FT HVSVPALEWEHSCYLKSYSNDAHLKTLLSWQLVNKGVGFASDGSIKYKVNGCRMSGDMN FT TSMGNCLLACAITHAFIRQNKIKARLLNNGDDCVLIFERECAAVVKAGLVRHWRRFGFQ FT CELEGDADIIEHVEFCQMQPVLSQSENSNYIMVRNPHVSLSKDLCCIGPWNTIVHAKKW FT IQAVGQCGMSLCGGLPLLQAYYGAFIRNSTGVDTSKILLDTSFASGFRELAKLGKRQQG FT EVPEETRFSFYLAFGILPSVQVALEQDFNNHVINWEFLPQGSQPSPPISCLLQKLK" FT CDS 135..806 FT /codon_start=1 FT /transl_table=1 FT /gene="p25" FT /product="p25 product" FT /db_xref="UniProtKB/TrEMBL:Q7T4K2" FT /protein_id="BAC78643.1" FT /translation="MSIRMKFGLALVAGCASVMYVAYRRRVVRGKMLPRNLQIENSRVV FT LKVLNSQSDGVDFPEEDSVDSSGPVILIGSVEVKLPAPVTVKRKPKAKHKSMPFITKLI FT NAAKVHFDGVPKPTESNHMAVTRFIKDYCKEHGVDDNQTRRVCAIAGPLILSPDRTDIM FT SRAFLYGPELSKQRAEYAAAASTISWFDAIVAAPLSCRAWRRAYLALMGYPDSVGYQMV FT K" FT CDS 2363..2554 FT /codon_start=1 FT /transl_table=1 FT /gene="p7" FT /product="p7 product" FT /db_xref="GOA:Q7T4K1" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q7T4K1" FT /protein_id="BAC78644.1" FT /translation="MSSPEIKVNLKERSRSVESKERTGKQSMGRKVANDAISAKNQGMM FT GASVYYADEIVVNINFNF" FT CDS 2554..2727 FT /codon_start=1 FT /transl_table=1 FT /gene="p6" FT /product="p6 product" FT /db_xref="GOA:Q7T4K0" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:Q7T4K0" FT /protein_id="BAC78645.1" FT /translation="MACCHDAPRDTLVPFLAIIICILLILISFLGQQERSYHHIDNSSI FT KTQYVGISTNGK" FT CDS 2730..3785 FT /codon_start=1 FT /transl_table=1 FT /gene="p38" FT /product="coat protein" FT /db_xref="GOA:Q7T4J9" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q7T4J9" FT /protein_id="BAC78646.1" FT /translation="MGNLPNNSDDFWVNKVRGWWRRASRESYSSCGCCDRCPWKAPCYH FT SRNSNTVVTHREYVTDVSNSSGVFVNNSSGSSSVFRINPSNTRVFNWLSSIAGSYDSYK FT FTRVRFTYVPYAGSNTPGRLYLGWDADSQDVIQPDRASLANFSPTSEDSVWTDSYLVIP FT VDREWRFVDDTNISSRKLVDLGQLVLATWGGVDNTVCGEVYVEYSVELRQPQPPSGFVQ FT VGRVDVPGILTFTGPAFVPASDLSISDTSFSFNLNTAGQYALSIDLQATTSGTLTVAGN FT CTLLGVVKSQFASGVGIYMCIVRSTGGPNSAASISIGTLTGLSRVQFFLSRGTTSAGIR FT VTCISSERHLS" XX SQ Sequence 4048 BP; 987 A; 886 C; 1019 G; 1156 T; 0 other; ggggataatt atagttggtt tccccttttg ttttcggaca acggtctcgg caagcttcgg 60 tattggcgga gagaaacgta atctcgtaca actaacttcc aaactagcca tttggattta 120 tctcttcttc ccttatgtct attcggatga agtttggctt agcccttgtg gccggttgtg 180 cctcagttat gtatgtggct taccgacgca gggtagttcg tgggaaaatg ttgcccagaa 240 atctgcaaat tgaaaactcg cgggtggtgt tgaaggtgtt gaattctcag tctgatggag 300 tagacttccc tgaagaggat tcggtggatt cctcaggtcc tgtgattctc ataggatctg 360 ttgaagttaa gctgccggcc cctgttacag tgaagcgtaa acctaaagct aaacacaaga 420 gcatgccttt tatcaccaag cttattaatg ccgccaaggt gcattttgat ggagtgccca 480 aacctaccga gagtaaccac atggctgtca ctcgtttcat taaggactac tgtaaagaac 540 atggagtcga tgataaccag acgcgtcgtg tgtgtgctat cgctggacct cttatcttgt 600 caccagatcg cactgacatt atgtcccgcg cgttcctcta tggaccggag ttgtccaaac 660 aacgggctga gtatgccgct gccgcgtcaa ccatttcttg gtttgatgcg atcgtggccg 720 cgcctctctc ttgtcgggct tggcgccggg catatttagc acttatgggg taccctgatt 780 cagtggggta ccaaatggta aaataggggt gccttgagca gctcgccggg gtgtgtacta 840 aggtacacag gggctcccac ccggatttgg tcgagcgtgc ttatggaggt cgccccaagt 900 tgcgcaaaat gatgcggttg ggtggtttag gaactggcgc acagttcggt gttcacaata 960 attcccttcg aaatctgagg cggggactta ttgagcgggt cttcttcgta gaagatgctt 1020 ctaagaagct tgtacccgct ccaaaaccac tctcaggtgt ctttgaagag cttaactatt 1080 ttcgatcacg gcttcatgct attgttggtt tgcactcccg ggtatcagag gatgctttct 1140 tatccttcta ctcaggccgg cgccgcacta tttatgaagc tgctgtgaaa tcattgtccg 1200 agctccctgt tcaaagacaa gattctttcc ttaaaacatt cgtgaaggct gaaaagatca 1260 attttactgt taaacctgat ccagccccac gtgttataca acctcggaac actaggtata 1320 atgtagaggt tggtagatac ctacgacgtt atgaacatta tctttatcgg ggtatagaca 1380 agatatttgg tgggcccaca atcattaagg gctacactgt ggaacaaata ggtggtatcg 1440 ttgaggaagc atggaaccga ttcgacagcc cggttgctat cgggtttgat atgaagcggt 1500 ttgaccagca tgtgagtgtt cctgctcttg agtgggagca ctcatgttac ctcaaatctt 1560 attccaatga tgctcacctt aagacattac tgtcttggca attagttaac aaaggtgtgg 1620 gatttgctag tgatggttct attaaataca aggtcaatgg ttgtcggatg agtggtgata 1680 tgaacacttc tatgggcaat tgcttgctcg cttgcgctat aacacatgcg tttattcgtc 1740 agaataagat taaggctaga ctgctcaaca atggtgatga ttgtgtactc attttcgaac 1800 gtgaatgtgc cgcggtggta aaagccggct tagtaaggca ctggcgaaga ttcggatttc 1860 aatgcgaact cgaaggtgat gctgatatta tcgaacatgt tgagttttgt caaatgcagc 1920 ccgttttgtc ccagtctgag aatagcaatt atattatggt gcgtaacccg catgtcagtt 1980 tgtctaagga cttgtgttgt atcggccctt ggaacactat tgtccatgct aagaaatgga 2040 tccaagcagt ggggcagtgt ggtatgtcac tatgtggcgg attacccttg ctccaggcct 2100 attacggggc ctttatccgt aattccaccg gagttgacac tagtaagatc ttgcttgata 2160 catcttttgc tagtggcttt cgtgaacttg ccaagcttgg taagagacaa cagggggagg 2220 tgcctgaaga aacacggttt tcgttttacc tggcgtttgg gattttgccc agtgtgcagg 2280 tagcgcttga acaagacttc aacaaccatg ttattaattg ggaatttctc ccccagggat 2340 cccagccaag tccaccaata tcatgtcttc tccagaaatt aaagtgaatt tgaaggaacg 2400 ttctcgatct gttgagtcaa aggagcgaac gggaaaacag tctatgggca gaaaggtggc 2460 caatgatgcc atctccgcta agaatcaagg tatgatgggg gccagtgtgt actacgctga 2520 tgaaattgtg gttaatatta acttcaactt ttaatggcgt gttgtcacga cgcccccagg 2580 gataccttag tgccattcct agcaattatc atctgcattc tgttaatact tattagcttc 2640 ttgggccaac aagaaagatc gtatcatcac atagataata gctctattaa aactcagtac 2700 gtaggcatct caactaatgg aaagtaagaa tgggaaacct tccaaacaac agcgacgact 2760 tttgggtaaa caaggtaagg ggttggtggc gacgtgcgag cagggaaagt tacagctcct 2820 gtggctgttg cgatcgctgt ccgtggaaag cgccctgcta tcactcccgc aacagtaata 2880 ccgtcgtcac tcacagagaa tacgttaccg atgtctccaa ctcctcaggc gtatttgtta 2940 acaattccag tggtagttct tcagtatttc ggattaaccc gtcaaacact cgagtgttta 3000 actggttgtc tagcattgcc ggatcatatg attcttataa gttcacacgg gtacgattta 3060 cctatgtacc ttacgccggt tctaatactc ctggaagact ctaccttgga tgggatgctg 3120 attcacaaga tgttattcag ccagatagag catccttagc aaattttagc cctacttcgg 3180 aagattcggt gtggacagac tcgtacctag tgataccagt ggatcgtgag tggcggtttg 3240 tggatgacac aaatatctcc tcccgtaaac tagtggatct gggacaacta gttctagcca 3300 cctggggcgg tgtggataat acagtatgtg gcgaagtgta tgttgagtac tcagttgagt 3360 tgcgtcaacc ccagcctcct tctggatttg tccaggtagg gcgggtcgac gttccgggta 3420 ttctcacttt cactggacct gcttttgtgc cagcctcaga tttgtcaatc tctgatacta 3480 gtttctcatt taatcttaat accgctggac agtacgctct tagtatcgac ttgcaagcta 3540 ccacatctgg tacattgact gtagctggga attgcaccct tttgggtgta gttaagtcac 3600 agttcgctag tggtgtagga atatacatgt gtatagtcag atccactggt ggaccaaatt 3660 ccgcggctag catctctatc ggaacgctga ctggcttgtc gcgagtccaa tttttcttgt 3720 cccgtggtac tacctccgca ggaattcgcg tgacctgcat aagctctgag aggcatctca 3780 gttaacaata tgcacgagct gtcttgtaac acagcaatgg agtaagtgta ctctggtagc 3840 aatgggtggg gtcgatttcc tacgtctagc tttggccggc tagcgtctct cgtagtgggg 3900 aaataactca ttgagaccag ctcagaacgc tgacattgtc tgtgtttgga tagagggctt 3960 ggggaaaact ccgtaaggag gggcgcccga gagcctagta acaccaaatt tataaactag 4020 gggggaccgt taaggtctcc cccgcccc 4048 //