ID AB085613; SV 1; linear; genomic RNA; STD; VRL; 7607 BP. XX AC AB085613; XX DT 27-MAR-2003 (Rel. 75, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 2) XX DE Cucumber yellows virus ORF1a and RdRp genes for methyltransferase and DE helicase polyprotein, RNA-dependent RNA polymerase, complete and partial DE cds. XX KW . XX OS Cucumber yellows virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-7607 RA Natsuaki T.; RT ; RL Submitted (18-MAY-2002) to the INSDC. RL Tomohide Natsuaki, Faculty of Agriculture, Utsunomiya University; RL Mine-machi 350, Utsunomiya 321-8505, Japan RL (E-mail:natsuaki@cc.utsunomiya-u.ac.jp, Tel:81-28-649-5449, RL Fax:81-28-649-5401) XX RN [2] RX DOI; 10.1099/vir.0.18605-0. RX PUBMED; 12655104. RA Hartono S., Natsuaki T., Genda Y., Okuda S.; RT "Nucleotide sequence and genome organization of Cucumber yellows virus, a RT member of the genus Crinivirus"; RL J. Gen. Virol. 84(Pt 4):1007-1012(2003). XX DR MD5; da8b8336646b002a60fce00cbb8f5fb7. DR RFAM; RF01095; PK-CuYV_BPYV. XX FH Key Location/Qualifiers FH FT source 1..7607 FT /organism="Cucumber yellows virus" FT /segment="2" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:32618" FT CDS 243..5906 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1a" FT /product="methyltransferase and helicase polyprotein" FT /db_xref="GOA:Q806Y9" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q806Y9" FT /protein_id="BAC66370.1" FT /translation="MPSINRTITGTELSNNLSLKGKITVFPLDPFTEEKFDFLREKNFN FT PKKVFCAHRLQVLVDHFNLHGCSFKKMPVPLINAFGYDFSKINQFIDQKLSVKIGMETI FT RNTSVLEDITGKTGFSDGYLVRKYEDRRHADVFISFGRYFKYDHDIMFRLTFAKTHNRR FT RLRTIVETSLGRMEDRGEVYLKPFTLFDRLPSKAFEMQCLLLSVLERCDDMCEIVNYYK FT NPKFSQPVKKIREKLYRRCTVPMIGVKQSNPPVLMVPRMTPVKPTFKVTPYATTQHIIR FT DDGEEEFVVRLRGGKVVVVKNDKRAITNLFNATLGEGSYKIHSEAFTPNGKRFKHYKSA FT YCWLDAFLLARKKIPMETVPHPCLSYGYLLRCGLEKVMKGRITMVSATHGHFSVERVTE FT KRNARRDTYVGVRWDDGAEVSLKNISNVFDDICSGILSQTTLRAENDVMTNIVRRVSDK FT INSVNSMEKELTINVCLSSSQKKKLCVLFPELNFDFSETSYSSHALFTAIRQCENYVMA FT KRMGFSNFIDAGGDIVSVLHKKLNNVHVCSPLVDVKDAHRHMTRSNQIDNMTGLTETAT FT LCNDKCQDCKVERQNIVAVEVYDMTLHDMAKSLLSHKSKRFDFSIVIPPEVCEPECDVR FT LFDDSLRVQSDGNTVTYFYGDCGESYSHDAQTLRDILRMQIFSVDGVVFKKTLECSKEA FT LHFFSLVPCVGMPPGRLTFSSYYSRSEQDKVLMVIPSRDKFGGISNVKVKVDKSIVYHL FT LEYVMNTALRVDDKAIEYLISQFRARKSISIKGGKVIQTPFELPLDLYPGFLGVILGEG FT IRLREKTHYIARMSYYRHYLPTIINIMIAFMNRTFTKARQFCYESIVDMFRYVMGDSFI FT NDAVNGDKRIFDIMEVYDFRQTVNIVGDGQNRNVINESFQKFLNESKENLRTLDEKFSE FT IDELFTDSESDKLKDLVLSGGGASNQYVFISFDLYKRIYGFISRLVPKKSLVDKLVVMI FT SKVITYLLNKFKKMSQSVVTIISDVIRAIIDYIRTGDSRLLKVFKTAGGVELSVIQSAE FT NIVLAGGGAHSFNLHTLFKLFPFSGVFRIKSTWKSLVVNVRSFLKRIAELYHDVKEVPG FT LILEFVKAGLSVVKDYVTSSEGLETLIQNTSLTITNLIVSIFTGNVGVLGIMLSNFLFL FT GLKIFGIEKKYLGCNTVTAQVANVLLPPTYFGPLAFPIRGLLSKVVETKLKMKCSKISQ FT LKPAATDLIAKDVTLIRFYDKFSPSALRVCIYISIIFVLFSPRLMLTLGMCCLLIGEMK FT KFLSTTVLQTNISLSYASVLKKTQKSQRMKRFKSILAEKFLRSKTDNQQSNDDEPQMIA FT GSQIDSDVDVEFDYDGSYVEKSKPTQPLVQERKMKDKLVTGNWADVSDSSSVGSVMEFL FT NYSNLRESTDRRFLKCDVTFGLSDIILKYPISSLQVCVTGANSRINALAEYYYLESQKL FT CIEMGKLDNLARMFNSKTSETKCFKDTVWDLRNNLDDSTLYISENGDSWYRLKRGDLKK FT TKLEGVSKMTLDQSLINFDRSHKGVQFTSEELLGMYTNNRCLGLEKFIDKATGFKVEPS FT TDKIKFFNKPPGAGKTTTIVNSLVKDLSSRTTCLSLTCTNAGRKEIVSKLKARGVTSPH FT LYAMTYDSLLMKGKEVTITNLYCDEIFMVHCGEWFACLNLIKCQSIECFGDKNQIPYIN FT RVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNPLYPGGVYSAGSNC FT DNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDSKSANTVNEVQGG FT TFPTVMLFRNKQFDNPLYSDVNQFIVSISRHTDRMCYKAISSKLNDYVGEKISALNTVA FT DYIIKEYKFKRRV" FT CDS <5905..7422 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q806Y8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q806Y8" FT /protein_id="BAC66371.1" FT /translation="DTYDLKIDCLRAPSTFSRPSASHHRAINEFMTLINPGLSAYNFIH FT RTLLFEYEQFELPPVENAKLVLSHSKPYAGAEFIVPDIMGKGERSRPNTWKQVMISLSH FT RNFSAPRINENLDTTKTAERLMSGLMTGLNPLKLSENYDTILPDMYSIDKWLNTRDGDK FT YRKLKRSFSHTLMIQQFENLRLMVKGDMKPKMDMSSYSTYSPPSNIIYYEHVINMFFSP FT MFLEVFDRLTYCLAGNIVLYSGMNLDTLGELISAKLQYPISEYKTIEIDFSKFDKSQGV FT VFKLYEEIVYKFFRFRKIYMENIKLTEYFCKAKSRSGVSVELGAQRRTGSPNTWLSNTL FT VTLGIVLSTYDLRDIDLLLVSGDDSLIFSRKSLKNQVNEINRDFGMEAKFIENSVPYFC FT SKFIIEDRGSIRVLPDPVRFFEKLSVPMSLSDFESGEMLRERYTSYKDLMVGYNLDTNI FT ILVDSLISVRYSIPLMSSYAALCYIHCMCSNITAYKRIYHDSFVVVI" XX SQ Sequence 7607 BP; 2224 A; 1531 C; 1662 G; 2190 T; 0 other; ataaatttat tttatcattt gttattacgt acggcggaaa taacttttca attcccaacc 60 gctgattaac gtcagcaccc cagtgcggca ctactgtgtc tcactaattg gttaacgatt 120 tcgcggcgat ttatcgtctc gaatctacaa ccattctacc caataccaaa caataccagg 180 ccgccagtac ctcaaactaa cctgacttta tcaagcattc cttggtagta aacgtcaaaa 240 caatgccgtc aattaatagg acaatcactg gcactgagtt gtccaacaac ttgtccctca 300 aagggaaaat cacagtgttc ccattagacc ctttcacaga agagaagttc gacttcctca 360 gagagaaaaa cttcaaccct aagaaggtct tttgtgccca cagattgcaa gttttggtcg 420 accacttcaa tctccacggc tgctcattca agaaaatgcc agttccgctg atcaatgctt 480 ttggctacga cttttcgaag ataaaccaat ttatagacca aaagttgtca gtcaaaatcg 540 gtatggagac cataagaaat acatctgtgc ttgaagacat aaccggtaaa acaggttttt 600 cagatggtta tttagtcagg aaatatgaag accgtcgtca cgcagatgtc tttatctcgt 660 tcggtaggta ttttaaatat gaccacgata ttatgttccg gttaacgttt gcaaaaacac 720 ataatcgaag gcgactccgc accatagttg agacctccct tggaagaatg gaagacagag 780 gcgaggtcta cttgaagccg ttcactctgt tcgatcgtct tccatccaaa gcttttgaga 840 tgcaatgtct tcttctctca gtccttgagc gttgtgacga catgtgtgag attgtcaact 900 attacaaaaa tccaaagttc tcacaacctg tcaagaagat tcgagagaaa ttgtaccgca 960 ggtgcacagt gccaatgatt ggagttaaac agtcaaatcc gcccgtgctg atggtaccac 1020 gcatgacacc cgtgaaaccc acattcaagg tgacacctta cgccacaact caacacatca 1080 tcagagatga tggtgaagaa gaatttgtgg tgagacttcg aggcggtaag gtcgttgttg 1140 tgaagaacga taaaagggct atcacaaatc tgttcaatgc gacactgggc gagggttctt 1200 ataaaatcca cagtgaggct ttcacaccca atgggaagag atttaaacac tacaagagtg 1260 catactgctg gttagacgcg ttcctcttgg ctaggaagaa gatacctatg gagacggtgc 1320 cacacccttg tctgagttat ggataccttc tccgttgtgg ccttgagaaa gtgatgaaag 1380 ggcgcatcac aatggttagt gccacccacg gacacttctc agttgagcga gtcactgaga 1440 aaagaaatgc tcgacgtgac acctatgtgg gcgttcgctg ggatgatggt gccgaggtct 1500 ctttaaagaa catcagtaat gtttttgacg acatctgctc aggcattctt tcacagacca 1560 cactccgtgc tgagaatgac gttatgacga acatcgtcag acgcgtgtca gacaagatca 1620 attctgtgaa cagtatggaa aaggagctta caattaatgt ttgtctctca agttctcaga 1680 agaagaaact ttgcgttttg tttccagagt tgaattttga cttttcggag acatcatatt 1740 cgtcgcacgc tcttttcaca gctatcaggc aatgtgagaa ttacgtcatg gcaaagagaa 1800 tgggcttctc aaattttatt gacgccgggg gcgacattgt gtccgtgttg cacaaaaagt 1860 tgaacaatgt acacgtttgt tccccgctag tcgatgttaa agacgcccat aggcacatga 1920 ccagaagtaa tcaaattgac aacatgactg gtctcaccga aacggcgact ttgtgcaatg 1980 ataaatgtca agattgcaaa gtggaacgac agaacattgt cgctgtggaa gtttacgaca 2040 tgactttaca cgatatggca aagtcgttgt tgtcacataa atcaaagcgc tttgacttct 2100 caatcgtcat cccaccagag gtttgtgaac ccgaatgtga cgtgagactt tttgatgatt 2160 ctctgcgggt ccaatcagat ggaaacacag tcacctactt ctatggtgat tgtggtgaga 2220 gttatagcca tgatgctcag acactcagag acatactgag aatgcaaatc ttctcagttg 2280 atggagttgt attcaagaaa acactcgagt gttccaaaga agccctccac ttcttttctc 2340 tagtaccatg tgttggtatg cctcctggaa gattgacatt ctcttcctat tactcccgct 2400 cggagcaaga taaggtcttg atggtgatcc cttcaagaga caagttcggc ggaatttcca 2460 atgtcaaagt taaagtggat aagtcgatcg tttaccacct attggaatat gtgatgaata 2520 ctgctctgag agttgatgat aaagcgattg aatatctaat ttctcaattc agagcgagaa 2580 agagcatctc aatcaaggga ggtaaagtca tccagacccc ttttgaattg ccattggatt 2640 tgtaccccgg cttcctcggt gttattcttg gtgaagggat taggttaaga gagaaaactc 2700 attacatcgc gaggatgagt tattatagac attacctccc gacgatcatt aacataatga 2760 tcgctttcat gaatcgaaca ttcaccaaag caagacaatt ctgttatgaa agcatcgtcg 2820 atatgttcag gtatgtcatg ggagattcct tcatcaacga cgccgttaat ggggacaaga 2880 gaatttttga tattatggaa gtttacgatt tccgtcaaac tgtcaatatt gttggggacg 2940 gtcaaaatcg aaacgtcatc aacgaatcct ttcagaagtt cttgaatgag tctaaagaga 3000 acctgaggac gcttgatgag aagtttagtg agatagacga attgttcacc gattcagaat 3060 cagacaaact gaaagatctt gtattgtctg gcggtggtgc ttccaatcag tacgttttta 3120 tctccttcga tctctacaag cgtatatatg gctttatatc taggcttgtc ccgaagaaat 3180 cgcttgttga caaactggtg gtgatgattt caaaggtgat aacttatctc ctcaacaaat 3240 tcaagaagat gagccaatct gtcgtcacaa tcatctctga tgtcattcga gccataatcg 3300 actacattcg gactggcgac tctagactgt tgaaagtctt caaaaccgcc ggaggtgttg 3360 agttgagcgt cattcaatct gccgagaata tcgttcttgc tggcgggggt gcgcattctt 3420 ttaatctcca cactcttttc aaactctttc ccttcagtgg agtttttaga ataaaatcaa 3480 cctggaagag tttggtagtc aacgtaaggt cgttcctcaa gcgaatcgct gaactctatc 3540 acgatgtaaa ggaagtacct gggctgatct tagaattcgt caaagctggt ttgtcagttg 3600 tcaaagatta cgtgacgagt tctgagggtc ttgagacttt gattcaaaac acttcgctga 3660 ccatcaccaa tttgatcgta tcaattttta ccggaaacgt cggagtgctc gggatcatgc 3720 tatccaactt cctgttcctt ggtttaaaaa tttttggtat tgagaagaaa tatctgggtt 3780 gcaataccgt gacagctcaa gttgccaatg ttcttctacc tccgacttac tttggcccac 3840 tagcttttcc cattagaggc cttttgagta aagtggttga gacgaaattg aaaatgaaat 3900 gctcaaagat ttctcaattg aaaccagcgg caaccgattt gatcgcgaaa gatgtcactc 3960 tcataagatt ctacgacaaa ttctcaccta gcgcgttgag agtgtgcatc tacatctcca 4020 ttatttttgt tctcttctca ccaaggttga tgttaactct tggcatgtgt tgtttgttga 4080 ttggtgagat gaaaaagttc ctgagtacga cagttctaca aaccaacata agtttgagtt 4140 acgcctccgt tctgaagaag acgcagaaat cccaacggat gaagaggttt aaatcaatct 4200 tggcagaaaa atttttgaga tcgaagaccg ataatcaaca atctaatgat gatgagccac 4260 agatgattgc cggttcccag attgattccg atgtcgatgt tgagtttgat tatgacggtt 4320 cgtacgttga aaaatcgaaa ccaactcaac ctcttgttca agaacggaag atgaaagata 4380 aactcgtcac cggtaattgg gcggacgtga gtgatagcag ttctgtcgga tctgttatgg 4440 aattcctgaa ctattcgaac ttaagagaat ctacggatag gagatttctc aagtgtgatg 4500 taacattcgg gttgagcgat atcattttaa agtatccaat ttccagtctt caagtttgcg 4560 ttactggagc aaactcgagg atcaatgcgc ttgcggaata ctattatttg gaatcccaaa 4620 aattgtgtat tgaaatgggt aagctggata atttagctcg catgttcaat tccaagacca 4680 gtgagaccaa atgcttcaaa gacactgttt gggatttgag aaacaatctt gacgactcaa 4740 ctttgtacat ctctgaaaat ggtgactcct ggtataggtt gaaacgagga gatctaaaga 4800 agacaaaact ggaaggcgtg tctaagatga ctctcgacca aagcctgatc aattttgata 4860 gatctcacaa aggagtgcaa ttcacgagtg aagaactttt gggcatgtat accaataacc 4920 gttgcttagg attggagaaa tttattgata aagctactgg tttcaaggtt gaaccttcaa 4980 cggataaaat aaagttcttt aacaaacctc cgggtgcggg aaaaaccacg acgattgtga 5040 actctttggt caaagatctt tctagtagga ccacttgcct atctctcacc tgcactaacg 5100 cgggtaggaa ggaaatcgtg agtaagttga aagcaagagg tgttacgtcc cctcatcttt 5160 atgccatgac ttatgattca ctcttgatga aaggcaagga ggtcactata accaatttgt 5220 attgtgatga gatcttcatg gttcattgtg gtgaatggtt cgcttgttta aacctgatta 5280 aatgtcagtc aattgagtgt tttggagaca aaaatcagat tccttatatc aatagggttc 5340 ccaacactgt ctgtcatcac tcttacagtg aatatatgac tttccccatc gagtacgata 5400 acatctcgta caggtgccca ccggacgtct gttatattct atccagcctg accgacccag 5460 ttggtaaccc tttgtacccg ggaggcgtct actctgctgg cagtaattgt gacaatttga 5520 gatctcttag tgtcgaaccg atgaactctc ctgatgagat caagttccgg gacgaagaca 5580 aacacatcac tttcacacaa ccagaaaagg aggaggtgtc acgcgcaata agtaaacagt 5640 tgaaggatag caaaagcgcg aatactgtga atgaggttca aggtggaact ttcccgactg 5700 tcatgctctt cagaaataag cagtttgata atcctctgta ctccgatgtt aatcaattca 5760 ttgtgagtat ttcaagacac actgacagaa tgtgttacaa agcgatctct tctaagctga 5820 acgactatgt gggcgagaaa atttcggcgc ttaacactgt agccgattac atcatcaagg 5880 agtacaagtt taagcggcga gtttgacaca tacgatctta agatcgattg tttgcgggcc 5940 ccttcgactt tcagccggcc gtctgcctct caccacagag ctatcaacga atttatgacg 6000 ttgataaatc cgggtttgag cgcctacaat ttcattcatc gcactctgtt gtttgagtac 6060 gagcagtttg aattgcctcc agttgaaaat gcgaaacttg tccttagtca ttccaagcct 6120 tatgcgggtg ccgaatttat cgtacctgac ataatgggga agggagagag gagcaggcca 6180 aacacttgga aacaagtgat gatttctctg tctcacagga acttcagtgc acccaggatc 6240 aatgaaaacc ttgacacaac gaagacagct gagagactga tgtctggttt gatgacaggt 6300 ctgaatcctc ttaagttgag tgagaactac gataccattc tccctgatat gtatagtatt 6360 gacaaatggt tgaacaccag ggatggagat aaatatcgga agctgaagag gagcttttca 6420 cacactttga tgattcagca gttcgagaac ttgagactca tggtcaaggg agatatgaaa 6480 ccgaagatgg atatgtccag ttactcaact tactctccac cgtccaacat tatttattac 6540 gaacatgtga taaatatgtt tttctccccg atgttcctcg aggtttttga tagattaacg 6600 tattgtttgg ccggcaatat tgttttatac tcgggcatga atctcgacac tctaggtgag 6660 ctgataagtg caaaacttca atacccgatc tcagagtaca aaaccatcga aatcgacttc 6720 agtaaatttg ataaatctca aggtgtcgtt ttcaagttgt atgaagagat tgtgtataag 6780 tttttcagat ttcggaagat atatatggag aacatcaaac tgacagagta tttttgtaaa 6840 gcaaagagca gaagtggagt gtcagttgag ttgggagcac aaaggagaac gggatcacca 6900 aacacttggc tgtcaaacac tctcgttact ctcggaatcg tcctttcaac ctacgacttg 6960 agagatattg atcttttgtt ggtgagcggt gacgatagtt tgatcttttc aaggaagtct 7020 ttgaaaaacc aagtgaatga gatcaacaga gattttggta tggaggcaaa gtttatcgag 7080 aactcggtcc cttatttttg ttccaaattc ataatcgagg atagaggttc gatacgtgtc 7140 ttaccagacc cagtgcggtt ttttgagaag ttgtcggtac cgatgagctt gagcgatttc 7200 gagagcgggg aaatgttgcg tgaaagatac acttcttaca aagatcttat ggtgggctac 7260 aatttagata ccaatatcat tttagtggat tcgttgatct ctgtccgtta ttctattcca 7320 ttaatgagtt cctacgcggc gttgtgttat attcattgca tgtgttcgaa cataaccgct 7380 tataaacgga tctaccacga tagttttgtt gtcgtgattt aattttatta agggctttac 7440 gttttatttt cgcccttaga gtcatatacg tgttattaac atagtgtgta ttgtaaaatc 7500 tcaaaaatac aatcaattat aatataagtt catagtttag ctatattata acgtttggtc 7560 gaatgctact agagcagcct gaccaaacta gtattagtaa ataaagg 7607 //