Dbfetch
ID AB085612; SV 1; linear; genomic RNA; STD; VRL; 7899 BP. XX AC AB085612; XX DT 27-MAR-2003 (Rel. 75, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 2) XX DE Cucumber yellows virus p4, Hsp70, p59, p9, CP, CPd, p26 genes for heat DE shock protein 70, coat protein, duplicated coat protein and hypothetical DE protein, complete cds. XX KW . XX OS Cucumber yellows virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-7899 RA Natsuaki T.; RT ; RL Submitted (18-MAY-2002) to the INSDC. RL Tomohide Natsuaki, Faculty of Agriculture, Utsunomiya University; RL Mine-machi 350, Utsunomiya 321-8505, Japan RL (E-mail:natsuaki@cc.utsunomiya-u.ac.jp, Tel:81-28-649-5449, RL Fax:81-28-649-5401) XX RN [2] RX DOI; 10.1099/vir.0.18605-0. RX PUBMED; 12655104. RA Hartono S., Natsuaki T., Genda Y., Okuda S.; RT "Nucleotide sequence and genome organization of Cucumber yellows virus, a RT member of the genus Crinivirus"; RL J. Gen. Virol. 84(Pt 4):1007-1012(2003). XX DR MD5; 4d65835b18329d1971a7f2d70672f8d8. DR EuropePMC; PMC2698906; 19473520. DR RFAM; RF01095; PK-CuYV_BPYV. XX FH Key Location/Qualifiers FH FT source 1..7899 FT /organism="Cucumber yellows virus" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:32618" FT CDS 373..477 FT /codon_start=1 FT /transl_table=1 FT /gene="p4" FT /product="4.1 kDa protein" FT /function="unknown" FT /db_xref="UniProtKB/TrEMBL:Q806Z6" FT /protein_id="BAC66363.1" FT /translation="MLILCVLIFLFLNRFLLRFRSNGYIIRDNRFDSV" FT CDS 694..2358 FT /codon_start=1 FT /transl_table=1 FT /gene="Hsp70" FT /product="heat shock protein 70" FT /function="unknown" FT /db_xref="GOA:Q806Z5" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:Q806Z5" FT /protein_id="BAC66364.1" FT /translation="MQAKVGLDFGTTFSTISSFTNGEMKTLYVNNSPYIPTCLSISSEG FT DVIIGSAAQVIDESEVKSCYFYDLKRWVGVDATNFLVIKEKIKPLYVVKLVGNDVYYTG FT VNKGFSCTYTVKQLILLFIDTMVRLFSKTNNLNIISLNVSVPADYKCKQRMFMKSVCDS FT LNFSLRRIINEPSAAAIYSVSKYPQHNYFIMYDFGGGTFDTSLITRDGQYVTVADTEGD FT SFLGGRDIDNEIQQFIVKSNNLSRPLPSDFLASIKEDCNTTGKSTFNVMDVDGKLLTIR FT FSREDLAACIEPYSKRSLKILDNLVKRRKISSGALFLVGGSSLLSKVQQDVAAYASANN FT FECVIDKDLRCSVSFGCSMQHAQEDSGSMIYIDCNSHPLMDLTLFGNPKVVVRKPMSIP FT YSTSDSRTIRSHYSTAVNVYEGSDIFTLNNDWLISANVRTSDHVNVGEDLVFIYKYNID FT GILELYAKNGRTGVEKLLPNSFSLTEKIEKLNLKLTQLSNVDEIATILSILSAFDDSLT FT GLLKFVKTPSILEREVAKISTPKELLERLVKQNKNFS" FT CDS 2533..4086 FT /codon_start=1 FT /transl_table=1 FT /gene="p59" FT /product="59.1 kDa protein" FT /function="unknown" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:Q806Z4" FT /protein_id="BAC66365.1" FT /translation="MVNLLLSPIVDEFLKFFFKRSDVSNQKRQLCEYLLKNSATENRNT FT YRANAGNKMISFDSNYRVSNGVVFIDDTSDLELLKLAIIYMYRVDRSLLKKTNYRPENF FT FASLDWRRSSREFSPFYSGDMNDYLAANNEIGCTYTEKDIKDHYPNISELRALTLYRVC FT NSLGKYIDLKTLESGSVKGFSISTSAEDGGIGEGLTANKLFSECLKIFRVYLSLSTTKA FT GIAKISVNKRYFETFFTSLDSHSDLSKIKSNPLVIAFFINSFDKLTVDSTGFKDNFRAI FT KQLEKPFRKFLKDVFLIDSSFSEETLFINLPKTSVSEILQEPTMVSEFVRKDDSISLES FT VANTLPDSTDNSVTEWIHTFLARKGDIPKHRLTDALLFILGRYTTNIKRLVQPNDVGIT FT IEGKRVTFKMSELNSFVVNRSVRIIPKLKGINVLRQWANKRSYRALTLFRSANFDPGFF FT SNVPGILPYMRFDFYKAIPLSQMSQQEVESFRTLRLVTEAKSDASASSISDCKQWILKV FT " FT CDS 4068..4316 FT /codon_start=1 FT /transl_table=1 FT /gene="p9" FT /product="9.8 kDa protein" FT /function="unknown" FT /db_xref="UniProtKB/TrEMBL:Q806Z3" FT /protein_id="BAC66366.1" FT /translation="MDFESLIDKYTLERVEDMFSLYGKFGNELPTLSDFLLDVIDKFFL FT PFSAKQKELPIKIEDLETFLVCIKFYRDNYILRRYGR" FT CDS 4306..5064 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q806Z2" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q806Z2" FT /protein_id="BAC66367.1" FT /translation="MGDNDDGKKSDDNVQLQNDVPAPVENKILDQKKLDEFSKIDRMIS FT SLGRRDDIVNQDILEADVLKSIDVTADRGDVLNTQDSETFVRLCKSFCKSVVKAEVNEK FT QFTGFYLSFIQAALNQSTSTKNLRNENLINTFKVDDQTYSWKTAHFIRFIKGHFPTIDN FT PIRQYLRGNENQVAILRATGKLKSDGHLAAKHGTTTQFWDSTSDFTNGCKVNISDDDLT FT ANWLQRETATKGKNKKNTIYNVSQLASYGN" FT CDS 5054..7027 FT /codon_start=1 FT /transl_table=1 FT /gene="CPd" FT /product="duplicated coat protein" FT /db_xref="GOA:Q806Z1" FT /db_xref="UniProtKB/TrEMBL:Q806Z1" FT /protein_id="BAC66368.1" FT /translation="METERQFDEGVPDEDQELSARAASPYLFHNFTLPLIESNTLEFDV FT NFHDHILANSIILYIRFHIKDAQILYKIDGGNFGRQSIQQVGGSFFSLRYTEIAKPKLL FT NNGVTNSFAIVPTNDSYLVKIKGWNCYGIKKSFDPTNIEFAVSFPIKGFSLTGGRTYEA FT NVISLADIFQNFKINGVSSSLGLKAYVLYGAGNKTSFNVVPKRTLNLNEVANQSSLELM FT EKKERTVPELPDISTSQNSAYDSQCFRLYDVYAPTQNPKSKVRITGSLKPISCREVRSI FT LQLWFGDLKNMLELLVDCDPIRNKEIQMKIFYRKNGNSTYLTSYIQKAIPVQEKGNLKL FT YEFGFNYSEDGVFEIITAGRTSATFKLKIPVPKLQVGYEFQFTKELSDPKNVGKLKKLI FT NFGRIALIEIDGKKIELSPVKVAEGTNQTSVSLCAANPPIDAEEVKEIKDMLVVKNDKP FT EIVENEKEVVDVTQNDEVSNLSANYIASVTSPISDISLRRIFEKVRKHYVDSGIKESDA FT ELLIYQMGVSFCTSKNAMSDNSNFIFWKTVSGTNKRFSKSAHSRMLNNQTSQCCNVERL FT LLRSRSLLIFNLLKRKQLEWPHLHAQRRGLRPEFAYMACDFYDLKALPLSEAEILALNE FT SHKYSLFRNKHKRTIVNVNQIA" FT CDS 7024..7716 FT /codon_start=1 FT /transl_table=1 FT /gene="p26" FT /product="26.5 kDa protein" FT /function="unknown" FT /db_xref="UniProtKB/TrEMBL:Q806Z0" FT /protein_id="BAC66369.1" FT /translation="MRRMDFPVLTSETTGEQANDLDMLASNVNIILNILQDHRQHDNFE FT LQNALNSCSTVINVCNLQTEDVNLFSTHSKVYQDLKSVGVSHEELSSQRSKYFSTLSTE FT DLNYLMFDVANIFRLLLVARKNLVDNVALISIFTNYNVTDIPSFNRAITEYFSKAYPMS FT YYCQQEYAIDVADEYRFSHLLKSIKFPNKRSYIKKGELIEICKESLIFKISINYDHLGL FT NIKTIKID" XX SQ Sequence 7899 BP; 2376 A; 1563 C; 1645 G; 2315 T; 0 other; ataaatttat ccttagggtt aaagaaagtt ttcctccccc ctatagcatt ccccccgtta 60 gcgagaacat ttgttctctc taacacctcg tcggctgaaa taccgatagc ctaacggtac 120 ctatgcggct gattctctcc ctctttctcc agtagaatta ggtacctaac aaaaacccaa 180 accacacaat atcacggtgc cagtaacaca aactaaaccg accaatagaa ctcttgcaat 240 cgtcaagatg gtcattaatt ccggtctagt atcagggccc accgtggcgg ggtgatccca 300 acaatccttg gtttgtttga tgttcccatt aggccccaca aaaacattta tgaaataagt 360 ggtttcttta atatgttgat attatgtgtt ttgattttct tgtttttgaa tcgttttcta 420 ctcagattta ggtctaacgg ttatataatt agagataata gatttgattc agtgtaagaa 480 tcttcacttt ttgctcattt agtcgattat ttctttaact actaacacta ttggtcttac 540 agtttttgta aattctgcgt atagtttgtt ttctgtaaaa ttcttgtcgt tctttctcaa 600 tcttaaccgt agttccttta acgctctctc ttttagattt tctcttctct tgttccttat 660 ttcttttgga ttttattctt agtcataaac acgatgcaag cgaaggtggg tttggacttt 720 ggtacaactt tcagtaccat tagttctttc accaatggag agatgaagac tctgtatgtg 780 aacaactcac cttacatccc cacttgtttg tccatttcat ctgaaggtga tgtgatcatt 840 gggagcgccg cacaagtcat cgatgagtca gaagttaaat cttgttactt ttatgatctc 900 aaacgatggg ttggtgttga cgcgaccaac ttccttgtga taaaagagaa aatcaaaccg 960 ctttatgtcg tgaaattagt agggaatgat gtctattata ctggtgtgaa caagggtttc 1020 tcttgtacct atacagtcaa acaactcatt cttctattta ttgatacgat ggtaaggttg 1080 ttttcaaaaa caaataattt aaatattatt agtcttaatg tctctgtccc ggcagattat 1140 aagtgcaaac aacgaatgtt catgaaatca gtttgtgatt cgttgaactt ttcactccgg 1200 agaataatta atgaaccgtc tgcagcagcg atttattccg tctcaaagta cccgcagcac 1260 aattatttca taatgtatga ctttggtggc ggtactttcg acacgtcgtt gataaccaga 1320 gatggtcaat atgtcacggt cgctgacact gaaggggact cgttcttagg tggaagggac 1380 atagacaacg aaatccagca attcattgtc aaatccaaca acctgtctcg tcctctccca 1440 tccgatttct tagcctccat caaagaagat tgtaatacga ctgggaaatc tacattcaat 1500 gtgatggatg tcgatgggaa attgttgacc ataagatttt ctcgagaaga cttggccgct 1560 tgcattgaac cctacagtaa aagaagcttg aaaattctcg acaatctggt gaaaagaaga 1620 aagatttcgt cgggcgcgct cttcttggtt ggtggatcat cccttctatc gaaagtccaa 1680 caagacgtgg cagcgtacgc gtcagcaaac aactttgagt gcgttatcga caaagacctg 1740 agatgttcag tgtcttttgg gtgttcaatg cagcacgcgc aagaagattc cggatcgatg 1800 atttacattg actgtaattc tcatccgttg atggatctta ctctttttgg caacccaaaa 1860 gtcgtcgtgc ggaaacctat gtcgataccg tactcaactt ccgactcgcg caccatcaga 1920 agccactatt cgacagccgt caacgtttac gagggttccg acatcttcac cttaaacaat 1980 gattggctga ttagtgccaa tgttcgcact tcagatcacg tgaacgtcgg tgaagatttg 2040 gtgttcatct ataagtacaa catcgatggg attcttgagc tgtacgcgaa gaatggaaga 2100 actggtgttg agaaactcct ccctaactcc ttctccctca ctgaaaagat tgagaagttg 2160 aacttgaaac tcactcaact gtcaaatgtg gacgaaattg ctacaatact ttcaatcttg 2220 tcagctttcg acgattcttt gacaggtctt ctgaaatttg tgaagacacc gagcattttg 2280 gagagagagg tcgcgaagat ttcaacaccc aaggaattat tggaacgttt ggttaagcaa 2340 aacaaaaact tttcttgatc agcgaaatat ttttacgatg ttgtgcatct tcaaattgcg 2400 acagggagga tctttcaacg tcctttactt gtcagattcc cgcgattttt caggcgaaac 2460 ttttctgatc agttctgacg acgttacgct tttggaggat ctgatgtctc acttacactt 2520 cattaaaaca caatggtgaa tcttctacta tcaccgatcg tcgacgagtt tctcaagttc 2580 tttttcaaaa gaagtgatgt ctctaatcag aaacgtcaat tgtgtgaata cttgttgaag 2640 aatagtgcaa ctgagaacag gaacacctac agagcgaacg ctggcaacaa gatgatctcc 2700 tttgacagca actacagagt ttcaaatggt gtagtcttca tagacgacac tagcgatttg 2760 gagttactga aattggcaat catctacatg tatcgcgttg acagatcact tttgaagaag 2820 acgaattacc gtccggagaa cttctttgcc tctttagatt ggagaagaag cagtcgggaa 2880 ttctcacctt tctactcagg cgacatgaac gattatctcg cagcaaataa tgagatcggt 2940 tgtacttaca cagagaaaga tattaaggat cattatccaa atatatctga attgcgagct 3000 ttgactcttt atcgagtttg caattctctc gggaagtata tagatctcaa aacacttgag 3060 tcagggtcgg ttaagggttt ttcgatttca acgtcagcag aagatggcgg gattggtgaa 3120 ggtttgacag ccaacaaact cttttctgag tgcttaaaga tctttagagt ttatctatca 3180 ttgagcacca caaaggctgg tatcgcaaag atctcggtga acaagagata tttcgagacg 3240 ttcttcactt ctctagattc gcactcggat ttgtcgaaga ttaaaagcaa tccactggtg 3300 atcgcattct tcataaattc cttcgacaag ttgacggtgg attcaactgg gttcaaagac 3360 aacttccgag ctattaaaca actcgagaaa ccgtttcgga agtttttgaa agacgttttt 3420 ctcattgact catcattcag tgaggagacg cttttcataa atctaccgaa aacttcggtc 3480 tctgagatct tgcaggaacc cactatggtt agtgaatttg tgaggaaaga tgattccatt 3540 tctctcgaga gcgtcgcaaa cactctcccc gattcaactg acaacagtgt cacagaatgg 3600 attcacacct tcttggcgag gaaaggagac attccgaaac acaggcttac cgatgcactg 3660 ttgtttatct tgggaagata tactaccaat atcaagaggt tagttcaacc gaatgatgtc 3720 ggtattacca ttgaaggcaa gagagtaaca ttcaagatgt ctgaattgaa ttcattcgtg 3780 gttaatcgaa gcgtgcgaat tatcccgaag ttgaaaggca tcaacgtgct gcgacagtgg 3840 gcgaacaaga gaagttatcg agcattgaca cttttccgat cagcaaattt cgatcccggt 3900 tttttttcga atgttcctgg tatactccct tatatgcgtt tcgacttcta caaggctata 3960 cctctcagtc agatgtcaca gcaagaagtc gagtcgttca gaacgttgag acttgttact 4020 gaagctaaat ctgatgctag cgcttcgtca ataagtgatt gcaaacaatg gattttgaaa 4080 gtttgattga caagtacacg ttggaacggg ttgaagatat gttttcactg tacggcaaat 4140 ttggaaacga attgcccact ctctccgact ttttgctgga cgtgattgac aagtttttct 4200 tacccttcag tgccaagcag aaggaattac ccataaagat tgaagatttg gaaacttttc 4260 ttgtgtgcat aaagttttat agggataatt acattctgcg cagatatggg agataatgat 4320 gatggcaaga agtcagacga taacgtccaa ctccagaatg atgtaccagc tccggttgag 4380 aataaaattt tagaccagaa gaaattggat gaattctcga aaatcgatcg catgatctca 4440 tccttgggtc gaagagatga tattgttaat caagacattt tggaggcgga cgtattgaag 4500 tcaattgatg ttacggctga ccgaggcgac gttttgaaca ctcaggattc agaaactttc 4560 gttcgtctct gtaagagctt ttgcaagtca gtagtgaaag cggaggttaa tgagaaacag 4620 tttactggat tctatttgtc gtttattcaa gccgcactga atcagtcaac atcgaccaag 4680 aacttgagga acgagaattt gatcaacaca ttcaaggttg atgatcagac ttactcttgg 4740 aagacagcgc atttcatcag gttcataaag gggcatttcc cgacaataga caatcctatt 4800 cgtcaatact tgaggggaaa tgaaaaccaa gtagctattc tgagagctac gggtaaactg 4860 aagagtgacg gacatcttgc tgccaaacat ggaaccacta ctcaattttg ggatagcact 4920 tccgacttca caaacggttg caaggtcaac atttcggatg atgatttgac ggcaaattgg 4980 ctacagcgtg aaacagctac aaagggaaag aataagaaga acactatcta caacgtctcc 5040 caattggctt cttatggaaa ctgaacggca gtttgacgaa ggtgttccgg acgaagatca 5100 agagcttagt gctcgtgctg cttcacccta cctttttcat aatttcacct tacctctgat 5160 cgagagcaac actttggaat ttgatgtcaa tttccacgat catattcttg caaactcgat 5220 catcctgtac atcagatttc atattaagga tgcgcagatc ctgtataaga tcgatggagg 5280 taatttcgga aggcaatcga ttcaacaagt tggtggttct ttcttctcat tacgttacac 5340 cgagattgcg aaacctaaac tcttgaataa tggtgtaact aactctttcg caatagtacc 5400 aactaacgat tcttatctcg tcaagataaa aggttggaat tgttatggta ttaagaagag 5460 ttttgatccc acgaatatcg agttcgcggt ttcatttccg atcaaaggat tttcgctaac 5520 ggggggcagg acttatgaag caaatgtgat atcattagcg gacatctttc agaatttcaa 5580 aataaatggg gtcagttcat ctttagggct caaggcgtac gtactttacg gtgctgggaa 5640 taaaacttcc ttcaatgttg ttccaaaaag aacattgaat ctgaacgaag tggcaaacca 5700 gtcatcgctg gaattgatgg agaagaagga gcgaacagta cccgaacttc ctgatataag 5760 cacatctcaa aacagtgctt acgattcgca atgttttcgg ctctacgatg tctacgctcc 5820 aacgcaaaac ccgaagtcca aggtgcgcat cactggtagc ttaaaaccta tctcctgcag 5880 agaagttagg tctatacttc aattgtggtt cggtgatctg aagaatatgc tggaactcct 5940 ggtggattgt gacccaattc gaaataagga gattcaaatg aagattttct accggaaaaa 6000 tggtaattcg acttacctga catcatatat tcaaaaagcc attccggtgc aagaaaaggg 6060 gaatctgaag ctttacgaat tcgggtttaa ctactctgaa gatggtgttt ttgagatcat 6120 cacagctgga agaacatctg caacttttaa gttgaagata cccgttccta aattacaggt 6180 cggttatgaa tttcagttca caaaggaact atctgatcca aagaatgtgg gtaaattgaa 6240 aaaattgata aactttggca gaatagcttt gatcgagata gacgggaaga aaatcgaatt 6300 gtctccagtg aaagtggcgg aaggaactaa ccaaacttca gtaagtctat gtgctgcgaa 6360 tccacccatc gatgctgaag aagtcaagga gattaaagat atgttggttg ttaagaacga 6420 caagcccgag atagtggaga atgagaagga agtggttgat gtaactcaga atgatgaagt 6480 ttccaattta tcggcgaatt acatcgcgag tgtcacttca cccatcagtg atatcagcct 6540 ccggcgaatt ttcgagaaag ttaggaagca ttacgtcgac agtggcatca aagagtctga 6600 cgctgaactt ctaatttatc aaatgggcgt ctctttttgt acaagtaaga atgcaatgag 6660 tgacaattcc aacttcatct tttggaaaac agtcagtggt acgaataaga gattctcgaa 6720 atcggctcat tcccgtatgc tgaataacca aacctcgcaa tgttgcaatg tcgagaggtt 6780 gttactgagg tcgagaagtt tgttaatttt caatcttttg aaaagaaaac aactcgaatg 6840 gccgcacctt cacgctcaac ggagaggttt gagaccagaa tttgcttaca tggcttgcga 6900 tttctacgat ttgaaagcac tgccactatc ggaagctgaa atcttagcct taaacgagag 6960 tcataaatat tctctcttta ggaacaagca caagcgtacg attgttaatg tgaatcaaat 7020 tgcatgagaa gaatggattt tccagtgttg acgagcgaaa ccaccgggga acaagcaaat 7080 gatttggaca tgctcgcgtc gaacgtgaac ataatcctga acatactgca agatcaccga 7140 cagcacgaca atttcgaatt gcaaaatgca ctcaactcct gcagtacggt gatcaatgtt 7200 tgcaacctgc aaactgaaga tgtgaacctc ttctcgactc actcaaaagt ctatcaagac 7260 ttgaaatcag ttggagtctc acacgaagaa ctgtcctctc aaagaagtaa atacttctcg 7320 acgctcagca cagaagatct aaattatctg atgttcgacg ttgcgaatat ttttagacta 7380 ctcctggtgg ctaggaagaa tcttgtggat aatgtcgcac taatctccat cttcaccaat 7440 tacaatgtga cagatattcc ctcattcaac agggcgatta ctgagtactt ctcgaaagcg 7500 tacccgatgt cgtactactg tcagcaagag tacgcgattg acgttgcgga cgagtacaga 7560 ttctctcact tattgaagag catcaagttc ccgaacaaac gatcttacat aaagaagggg 7620 gagttgatag aaatttgtaa ggagagttta attttcaaaa tatccataaa ttacgaccat 7680 ttaggtctta atataaaaac aataaaaatt gattaaaaat aagggtttta tgttttaatt 7740 ttcatcctta gagtcatata cgtgctttta gcgtagtgtg tattataaaa tctcaaaaat 7800 acaaataatt ataatataag ttcatagttt aactatatta taacgtttgg tcgaatgcta 7860 ctagagcagc ctgaccaaac tagtattagt aaataaagg 7899 //