ID AB084788; SV 1; linear; genomic RNA; STD; VRL; 8374 BP. XX AC AB084788; XX DT 09-NOV-2002 (Rel. 73, Created) DT 21-JUN-2008 (Rel. 96, Last updated, Version 6) XX DE Bovine kobuvirus genomic RNA, complete genome, strain:U-1. XX KW . XX OS Aichivirus B OC Viruses; Riboviria; Picornavirales; Picornaviridae; Kobuvirus. XX RN [1] RP 1-8374 RA Yamashita T.; RT ; RL Submitted (08-MAY-2002) to the INSDC. RL Contact:Teruo Yamashita Aichi Prefectural Institute of Public Health, RL Department of Microbiology; 7-6, Nagare, Tsujimachi, Kita-ku, Nagoya, Aichi RL 4628576, Japan XX RN [2] RX DOI; 10.1099/vir.0.19266-0. RX PUBMED; 14573811. RA Yamashita T., Ito M., Kabashima Y., Tsuzuki H., Sakae K.; RT "Isolation and characterization of a new species of kobuvirus associated RT with cattle"; RL J. Gen. Virol. 84(Pt 11):3069-3077(2003). XX DR MD5; f0d288711c3f30a33543f7f00b5cb077. DR EuropePMC; PMC2292896; 18256215. DR EuropePMC; PMC2687027; 19402981. DR EuropePMC; PMC2954017; 20409388. DR EuropePMC; PMC3264332; 22114340. DR EuropePMC; PMC4007995; 24786960. DR EuropePMC; PMC4751110; 26256044. DR EuropePMC; PMC4785127; 26369290. XX FH Key Location/Qualifiers FH FT source 1..8374 FT /organism="Aichivirus B" FT /strain="U-1" FT /mol_type="genomic RNA" FT /isolation_source="bovine" FT /db_xref="taxon:194965" FT 5'UTR 1..808 FT CDS 809..8200 FT /codon_start=1 FT /transl_table=1 FT /db_xref="GOA:Q8BES6" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="PDB:5LZ6" FT /db_xref="UniProtKB/TrEMBL:Q8BES6" FT /protein_id="BAC23066.1" FT /translation="MDPSNFKLFSISHRTAKRWSWRRFRVETREKTLYSYVDPAVDAYL FT KRERRFPFSLPKPSHFYDCLFCNHPSEDDEDSLLTLDGEYGDPCPLHSGVLDPKPRYQK FT PPEDILEDSNWCDVLNEDVTYSTDSLQNAFDQLALALLPGSAQVKDSSHISKLYFKLFS FT LSQFPGVPTTPLSLPKPTGNIISQGQSQTNIYGNGNNVTTDLGANGWSPTVNTGLGDGP FT VSSSQDEVPGRAGGSSSAPKNSSPAVSTTHAQNFKHWWEPAASKALSRGVDKAPDGIEG FT AGKLASDAIKSKLSGARPGPSPNLIALNPSSTQHGNAMITTGSTAPVVVAYPPTPSVPL FT PNPDCPSEPGPSGDRTWLLDTFEWSQENPMWWCLAGQNGMQYNTLANPTYPFSASTNWG FT TQNGVAATAYPLPASFVQAYPDCPWTAMHDTHAYFNCGWRMQVVVNGTQFHAGALLIYA FT VPERPLLPNGVEYEHTTFVYPYTILNLYQSNTATLEVPYVGCTPNTTTCVHSPWTFYIA FT ILTPLAVASSSNQTLSVSVYITPVNSSFYGLRHVSKQHWKTRAVPGSGAFGTAVAGQEI FT PIYAFETFTPPVDYLPAEVHDWLEYAHRPGWADMFNWTTADTQDTRLALVPVSPAWLSA FT SGTPISFVLDLFTQWRGELTLSLLFTGSSQHYGRLVVCYSPPSGAPPATITEAMRGTYT FT VWDINSSSTLDFTIPFISQSYWKITNISAPDSLLASFGTLTLWVVAPLVAPSAAPPSAT FT IHAFLSASNSFSVRGMSMPTLALQAGDGIEAPTPVSNLENGEAAHTPEPRTTFQYSDNP FT STPETNLRRYFSVYRPSFMQGNKYGITATAGVHSVTYNPVEWIANAQVGDTLPILLSTF FT TYFRGDPRVAFTISNPAAYTAQVTFHYFPPGATPYDATSPNASTDLANCFTVDAQIPPT FT SMDTVCLSFPYLSVLSAIPTSYFGFSNFQGGSDVLNTTLGTIVIYVGWQGDAPTGTALT FT IYQKIAFGNFRGFVPRNPPKLTAYSQPNMVTKTNAIVKLPVYRPMATTKAMVRRQCAGE FT SLFQPCLCSRVYIVRAQRMTYTHWALRCVDSDGTRQISLSRFKLSAVVAYEDPEGEVYR FT EVEPFHWSLAVAMVGSPWDYSASNNCTHFVSNITGVELPNTGFSLALGIGALAIGAGVM FT AVQTAKGRITRQGLLTLGAPPGAIDAAHRVSRSIEETVSAIRSADLLNSTANLSLAASD FT IREASTRVSSSIDGFSNMLQDFARNFRGRVDDVVGSGISSFLTWLTKIFGYLLVLFGSP FT TPMSVAGLLVIICADLAPQLRTYFTERNTTLGALFYWLATKLGLLVTPEEAEVAAIEPQ FT GVRDLKEGVQAVRNTEWLAETAWKWAKRVLDWIRGKVKTDPKAILADSHDEILRHYSES FT IAALGSERTPISAITDAISRCRELVKVAADARSAPHSSFLNQALRNYQLALTQNRMADA FT GPRPEPVVIYLYGPPGTGKSLLGSLLASVLAQKLSGDPNDVYSPTSASCEYFDGYTGQV FT VHFIDDLGQDPEGRDWANFPNLVSSAPFIVPMANLEAKGTHYTSKVIVVTSNFTGPNQR FT AARSMGALERRLHLRICVDRKDGYKFDADDALRPLDLPSKYLTSQTKLSLFKCFNLKPD FT LNSIFLPEFNDFDQLVDAIVARLDRASGVSSRLAALIKRQGAHSERTFETAPSEIDADE FT VLEILSKSKPAPTHLTLERAIASNAPLSFIDTLWKWRRPVFATTTFLTVLGFVITVLGV FT AKVLWTKKEDTPDEPQAAYSGMPQLGKKDAKAKGPKPAPTRGVVRQAGPSPALPKIADN FT VLPIQARTPAGVNKCSALYLYSRICIVPTHIVPDNTIQIQLGNDVYDWATLKHVRLGKE FT MTVIWTPTSRQYRDLRRFLGSHPYPTGHLISAFQGVPMFIRFSKNHMVTLDVESVVHEP FT VAYGYKTPSFEGMCGAPLITDDPAGIKLLGFHVAGIVGSTGFSVPFYPYLPEIEQFATE FT CQSLIIPGPETHPGVNVNRKSQLGHSPAYGAFPVKKQPAVLHQRDARLEPGTKLDGQLF FT LKHNKGDMDKPWPGLEAAAALYFSKFPTLIRTLTQEEAINGTPNLDGMDMNQAAGYPWN FT TMGKSRRSLFIEEAPGYYVPTSELQAEIDKTLENPDYFYSTFLKDELRPTPKVTAGLTR FT VVEAAPVHAIVAGRMLLGGLIEYMQAYPGRHGSAVGCNPDLHWSKFFFKFAKFDQVYDL FT DYKCFDATLPSCAFRIVEDYLVKLTGDERVRAYVETIRHSKHVYGSQTYEMIGGNPSGC FT VGTSIINTIINNICVLSALIQHPDFSPDNYRILAYGDDVIYGCDPPIHPRYIKEFYDKH FT TPLVVTPANKGSDFPDSSTLYDVTFLKRWFVPDDQRPFYIHPVMDPDTYEQSVMWLRGG FT DFQDLVTSLCYLAFHSGPKTYGRWCERVREQCLKTSGFAPTFLPYEYLQLRWLNLCAA" FT mat_peptide 809..1369 FT /product="L" FT mat_peptide 1370..2470 FT /product="VP0" FT mat_peptide 2471..3139 FT /product="VP3" FT mat_peptide 3140..3940 FT /product="VP1" FT mat_peptide 3941..4342 FT /product="2A" FT mat_peptide 4343..4837 FT /product="2B" FT mat_peptide 4838..5842 FT /product="2C" FT mat_peptide 5843..6124 FT /product="3A" FT mat_peptide 6125..6214 FT /product="3B" FT mat_peptide 6215..6790 FT /product="3C" FT mat_peptide 6791..8197 FT /product="3D" FT 3'UTR 8201..8374 XX SQ Sequence 8374 BP; 1688 A; 2754 C; 1819 G; 2113 T; 0 other; tttgaaaagg gggtgggggg gcttcggccc cctcaccctc ttttccggcg gcgcatgttc 60 gcgtcgtcgt aagtctggat tcccaaggcc cactcggttc aacttcggtt tccggacaaa 120 tacaaagaac ctcagtcctc ttggtacttt ctcgcctgag tctacaaagc gagaaacctg 180 cccctctaac gccagacgag cggcataaaa ctcgaacttc tggcacgttc caccacccct 240 tctcctatcc caacccccat tgcgctctca aggtcgcgct tttccgagac tagctcggat 300 tcaaaaagtt cctggcaccc tttacccctt caggccctta aggtaggaac tgaccttgtg 360 ctgtgatctc ggtgcggaag tgctactgcg tagtgattgt aagatccttt tgtggttctg 420 ccctggcaag gctacagagt gctgtgatcc gctgcggatg ccatcctggt aacaggaccc 480 ccagtgtgcg caacagtatg ttcacggtct tccgtgttca ccacattcgg aacactgctt 540 tcgtgaaaca gtgtgtgtcc aatccctgtg atcagtatca accacaccac ctaggaatgc 600 taggaaggta ccccggttcg ccgggatctg atcctaggct aattgtctac ggtggtgctc 660 ctttttattt tccacttcaa ctcactggtt acaactgctt gatttctgtg tttgctgctt 720 ttctctgctc tcactgccat tctcaagtgt tcacactgtc caagctcctt tggttgttcg 780 cttccacttg ccactgtcaa ctcttgtcat ggacccctca aacttcaagc tcttctccat 840 ctcccaccgc actgctaagc gctggtcgtg gcgcagattc cgtgtggaga cacgtgagaa 900 aaccctctat tcttacgtgg accccgcggt tgacgcctac ttaaagcgcg aacgaaggtt 960 tcccttctcc cttcccaaac cctcccattt ctacgactgc ctcttttgca accatccctc 1020 tgaagacgat gaggattcac tcctcaccct cgacggagag tatggcgatc cctgtccact 1080 tcactctggt gttcttgacc ccaaacccag ataccaaaag ccccctgagg acattcttga 1140 ggattctaac tggtgtgacg tccttaacga ggatgttact tacagcactg attctctcca 1200 gaatgccttc gaccaactgg ctcttgctct gctccccggt tctgctcagg tgaaggactc 1260 ttcccacatc tccaaactct acttcaagct cttctctctt tcccaattcc ctggtgtccc 1320 taccacacct ctttctctcc ccaagcccac tggcaacatc atctcccaag gccaaagtca 1380 gaccaacatt tacggtaacg ggaacaacgt gaccaccgat ctcggtgcga acggttggtc 1440 tccaactgtg aatactggtc tcggtgatgg acccgtttct tcttctcagg acgaggtccc 1500 tggtcgtgct ggtggttctt cttctgctcc caaaaactct tctcctgctg tttccaccac 1560 ccatgcccaa aacttcaaac attggtggga acctgctgct tctaaggccc tctcccgtgg 1620 cgtcgacaag gctccggacg gcatcgaagg cgctggtaaa ctcgccagtg acgcgataaa 1680 gtctaagctt tcaggcgccc gacccggtcc ctctcccaat ctcattgccc tcaacccatc 1740 ttctacccag cacggtaacg cgatgatcac caccggttcc accgccccag tggtcgtcgc 1800 atacccacct accccctccg tgccccttcc caaccccgac tgcccttccg aacctggtcc 1860 gtcaggtgac cgcacatggc tcctggacac tttcgagtgg tcccaggaaa accccatgtg 1920 gtggtgcctg gctggtcaga atggaatgca gtacaacacc ctagccaacc ccacctaccc 1980 cttttccgcc tccaccaact ggggcaccca gaatggggtt gcggcaactg cttacccgct 2040 acctgcttct tttgtgcagg cgtatccaga ctgcccctgg accgccatgc acgataccca 2100 tgcctacttc aactgtggct ggcgcatgca ggtggtggtg aacggtactc agttccacgc 2160 tggtgccctt ctcatatacg ccgtcccgga acgccccctg cttccgaacg gtgttgaata 2220 tgagcacacc acctttgtct acccctacac catcctcaac ctctaccagt ctaacaccgc 2280 aacattggag gtcccctacg tcggttgcac acccaatacc accacctgtg tgcactcgcc 2340 gtggactttc tacattgcga tcctcacccc cttggctgta gcttcctcct ccaaccagac 2400 cctttctgtt tcagtttaca taactcctgt taattcttct ttctatggtc ttcgccacgt 2460 gtccaagcag cactggaaga ccagggccgt cccaggctct ggtgcttttg gaactgccgt 2520 tgcagggcag gagatcccta tctatgcttt tgaaactttc actccccctg ttgattatct 2580 acctgctgaa gttcacgatt ggcttgagta tgctcaccgg cccggctggg cagacatgtt 2640 caactggacc acagcagata ctcaggacac tcgccttgct cttgtccccg tttcacccgc 2700 ttggctctct gcatctggca cacccatctc cttcgtcctg gacctcttca cacagtggcg 2760 tggtgaactc accctgtccc tcctcttcac agggtcttcc cagcattacg gccgcctagt 2820 tgtatgctac tcaccgccaa gcggcgctcc tcccgctacc atcacggaag cgatgcgcgg 2880 cacctacact gtgtgggaca tcaattcttc ctccactctt gacttcacca ttcctttcat 2940 ctcccaatcc tactggaaaa tcaccaacat ctcggccccc gactctctac tcgcctcctt 3000 tggcaccctc actctctggg tggtggcccc ccttgttgca ccttctgcag cacctcccag 3060 tgctaccatc cacgccttct tatctgcttc caactccttt tctgtccggg gcatgtcgat 3120 gccgaccctg gccctccaag ccggggatgg tatcgaggcc ccaactcccg tttccaacct 3180 ggagaatggt gaagcggctc acacacctga gccacgcacc actttccagt actctgacaa 3240 tccctccact cctgagacca acctgcgccg ttacttctct gtgtatagac cgtcttttat 3300 gcaggggaac aagtacggca tcactgccac tgctggcgtc cactcagtaa cttacaaccc 3360 ggttgagtgg atcgccaacg cgcaggttgg cgacaccctc cccatcttgc tttccacttt 3420 cacctacttc cgcggcgatc cccgggttgc cttcaccatc tccaacccgg cagcctacac 3480 cgcgcaagtc accttccact attttccccc cggcgcaaca ccctatgacg ccacctctcc 3540 caatgcttcc actgacctgg ctaactgttt caccgtcgat gctcagatcc caccgacatc 3600 gatggacaca gtctgcctgt ccttccccta cctttcagtt ctttctgcta ttcccacttc 3660 ctactttgga ttctctaact tccagggcgg tagcgatgtg ctcaacacca cgcttggaac 3720 tattgtgatc tatgttgggt ggcagggcga tgcccctacg ggcaccgctc ttactatcta 3780 tcagaagatc gcttttggca acttccgtgg tttcgttcct cgcaacccgc ccaaacttac 3840 tgcctactcc caacccaaca tggtaacgaa gacgaacgcc atcgtcaagt tgccagttta 3900 ccggccaatg gcgaccacca aagccatggt gcgccgtcaa tgtgccgggg agtccctctt 3960 ccaaccctgt ctctgctctc gcgtttacat tgttcgcgca cagcgcatga cctacaccca 4020 ctgggccctg cgttgtgtcg acagcgatgg aacacgccag atttcccttt ctcgcttcaa 4080 gttgtctgct gttgtggcat acgaggatcc ggaaggagag gtctaccgag aggtagaacc 4140 tttccactgg tccttggccg tcgcgatggt gggcagccct tgggactatt ctgcttccaa 4200 caactgcacc cactttgtct ctaacatcac cggtgttgaa cttcccaaca ctggcttctc 4260 ccttgctctc ggaatcgggg cactggcgat cggggctggt gttatggccg ttcaaactgc 4320 caaaggccgt atcacccgcc aggggttgct gaccctcggg gctccccccg gggcgatcga 4380 tgctgcacac cgtgtctcaa gatccattga ggaaacggtt tctgcaattc gatctgctga 4440 ccttctaaac tccactgcta acctctctct tgctgcttct gacatacgtg aggcttccac 4500 ccgggtatcc tcttccattg acggcttctc aaacatgctc caggattttg cccgaaactt 4560 ccgtggacgc gtggatgatg ttgtcggctc tggaatctct tccttcctaa cttggctcac 4620 caaaatcttt ggttaccttc tggttctttt tggctctccc actcccatgt ccgttgctgg 4680 actcttggtg ataatctgtg cggatctggc accacagctt cgcacctatt tcactgagag 4740 aaacaccact ctgggcgctc tcttctattg gctggcaacc aagcttggtt tgttagtcac 4800 tccagaggag gcggaagttg ccgccatcga gcctcaaggc gtgcgggact taaaggaagg 4860 tgtccaggct gttcgtaaca ctgaatggct tgctgaaacc gcatggaaat gggctaagag 4920 agttctggat tggattcgtg gaaaagtcaa gactgaccct aaggccattc ttgccgactc 4980 ccatgatgaa atactcagac actactctga atccatagcc gcgctcggtt cagaacgcac 5040 tcccatcagt gccatcaccg atgcaatctc ccgttgccgc gagctcgtca aggtcgcagc 5100 tgacgccagg tctgctcccc actcttcttt tctcaaccag gccctccgca actaccaact 5160 tgctctcacg cagaaccgga tggctgatgc aggtccgcgc cccgaaccgg tcgtgattta 5220 cctgtatggg ccacctggca ctgggaaatc cttgcttggc tccctccttg cctctgtcct 5280 cgctcagaag ctctctggtg atcccaacga tgtgtactcc cccacatcag cttcctgtga 5340 atacttcgat gggtacacag gacaagtcgt ccacttcatt gacgacttgg gacaagatcc 5400 agagggccgt gactgggcaa atttccctaa cctggtctct tctgctcctt ttatcgtgcc 5460 catggccaac ctcgaggcta agggtactca ctacacttcc aaggtgatcg tcgtcacgtc 5520 gaacttcacc ggccccaacc aacgggccgc tcgatccatg ggcgcgcttg aacgcagact 5580 ccacctccgg atctgtgttg accgcaaaga tggatacaag ttcgacgctg atgatgccct 5640 ccgtcccctt gaccttcctt ctaaatacct tacctctcaa actaagcttt ctctcttcaa 5700 atgcttcaat ctgaaacctg acctcaactc tattttcctg cctgaattta acgatttcga 5760 ccagctcgtt gacgcgatcg ttgctaggtt ggatcgggcc tctggtgtta gctcccgcct 5820 tgctgctctc atcaagcggc agggtgccca ctcagagcgc accttcgaga ccgctccttc 5880 tgagatcgac gcggacgagg ttctcgaaat cctctccaaa tctaaacccg cccctactca 5940 ccttactctt gagcgtgcga ttgcatcaaa cgctcctctt tcttttattg acaccctctg 6000 gaagtggcgg agacccgtct tcgctacgac caccttcctc acagttctag gctttgtcat 6060 cactgtcctt ggtgttgcca aggtgctctg gaccaagaaa gaggacacac cggatgaacc 6120 gcaagcggct tattcgggca tgcctcaact tggtaagaaa gacgccaagg caaagggccc 6180 aaaacccgcc cccaccaggg gcgtcgtgcg acaagccggc ccctcccctg ctcttcccaa 6240 gattgccgac aacgtcttgc caatccaagc caggacgcct gccggcgtca acaaatgctc 6300 tgctctttat ctctactccc gcatctgcat tgtccctacc cacatcgttc cagacaacac 6360 tatccagatc caactcggga atgacgtgta tgattgggca accttgaaac acgttaggct 6420 cgggaaggag atgactgtga tctggacccc tacctcccgc cagtatcgtg acctccgtcg 6480 ctttctgggc tcccacccct accctactgg ccacctcatc tctgctttcc aaggcgttcc 6540 gatgttcata cggttctcca agaatcatat ggtcactctg gacgtcgaat ctgttgtcca 6600 cgaacccgtc gcatatggtt acaagacacc cagctttgag ggtatgtgtg gtgctccact 6660 cataaccgat gaccctgctg ggatcaagct ccttggtttc catgtggccg gaatcgtggg 6720 ctctactggc ttctctgtcc ctttctatcc ctacctgcct gagattgaac agttcgctac 6780 ggaatgccaa tccctgatca taccaggtcc ggaaacccat ccgggcgtga atgtgaacag 6840 gaaatcacag cttgggcact ctcctgccta tggcgcattc ccagtgaaga agcaacccgc 6900 tgtcctccac cagcgtgatg ctcgtctcga gcctggaacc aaattggatg gccaactctt 6960 ccttaaacac aacaagggag atatggacaa accatggccc ggtctcgagg cggcagcagc 7020 tctctacttc tctaagtttc ccactctcat ccgaacgctg actcaggaag aagcaatcaa 7080 tggcactcca aacctggatg gaatggacat gaatcaggcc gccgggtacc cctggaacac 7140 catgggcaaa tcacgccgct cattgttcat cgaagaggcc cccgggtact atgtccccac 7200 atccgaactc caggctgaaa ttgacaaaac cctggagaat ccagattact tctactcaac 7260 cttcctcaaa gacgagctca ggccgactcc caaagtcacc gccggcctga ctcgtgtggt 7320 tgaggcagct ccagtgcacg ccatcgtcgc cgggcgcatg ctcctcggtg gtctcatcga 7380 gtacatgcaa gcctaccccg gccggcatgg cagtgctgtg ggctgcaacc cagacctcca 7440 ctggtccaaa ttcttcttca aattcgccaa attcgatcaa gtgtatgact tggactacaa 7500 gtgttttgat gccaccctcc cttcctgcgc attcagaatt gttgaagatt acctcgtgaa 7560 attgactggc gacgagcgcg tccgcgcgta cgtcgaaacc atcaggcatt ccaagcatgt 7620 ctatggtagt cagacttacg agatgatcgg cggcaatccc tctggatgtg tcggcacctc 7680 catcatcaac accatcatca acaacatctg tgtcctgtca gcactcatcc aacatcctga 7740 cttctctcct gacaactacc ggattcttgc ttatggcgat gatgtcatct acgggtgtga 7800 tcctccgatc catcctagat acatcaagga gttctacgac aaacatacac ctctcgtcgt 7860 gactcccgcc aataaaggct ctgactttcc tgattcttct accctctacg acgtcacctt 7920 cctcaaacga tggtttgttc cggatgacca gcgtccattc tacatccacc ctgtgatgga 7980 cccggacacc tatgagcagt ctgtcatgtg gttgcgtggc ggtgactttc aggatcttgt 8040 cacctctctc tgctaccttg ccttccactc tggcccgaag acctacgggc gctggtgcga 8100 acgtgttcgt gaacagtgct tgaagacttc tggcttcgct ccaactttcc taccctatga 8160 atacctccag cttcgctggc tcaatctctg tgcagcttga cctcagaact ctggcctccc 8220 actgttcgtc ctggtagaat agacaagctt ttcactatcc ctaagaccac tctctccgtg 8280 gcattttcct ctcagtgtcc tgctccctca cgggactgca cccaggaact gtgagcttcc 8340 ccccctgtcc ttgaaatttc tattcttttc ttgc 8374 //