ID AB084452; SV 1; linear; genomic RNA; STD; VRL; 5836 BP. XX AC AB084452; XX DT 26-MAY-2005 (Rel. 83, Created) DT 01-JUN-2005 (Rel. 84, Last updated, Version 2) XX DE Gentian mosaic virus RNA1 gene for polyprotein, complete cds. XX KW . XX OS Gentian mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Fabavirus. XX RN [1] RP 1-5836 RA Kobayashi Y.O.; RT ; RL Submitted (30-APR-2002) to the INSDC. RL Yuki Ohdaira Kobayashi, National Agricultural Research Center for Hokkaido RL Region, Crop Environment Research Team; Shinsei, Memuro, Hokkaido, RL 082-0071, Japan (E-mail:oodaira@affrc.go.jp, Tel:81-155-62-9276, RL Fax:81-155-61-2127) XX RN [2] RX DOI; 10.1094/PHYTO-95-0192. RX PUBMED; 18943990. RA Kobayashi Y.O., Kobayashi A., Hagiwara K., Uga H., Mikoshiba Y., Naito T., RA Honda Y., Omura T.; RT "Gentian mosaic virus: A New Species in the Genus Fabavirus"; RL Phytopathology 95(2):192-197(2005). XX DR MD5; 3a2e5dd12128d774bb1d7f6ce5190608. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..5836 FT /organism="Gentian mosaic virus" FT /isolate="N-1" FT /mol_type="genomic RNA" FT /db_xref="taxon:182452" FT CDS 175..5736 FT /codon_start=1 FT /transl_table=1 FT /gene="RNA1" FT /product="polyprotein" FT /db_xref="GOA:Q4W8R6" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q4W8R6" FT /protein_id="BAD99001.1" FT /translation="MASELASVCVGFLRCSMGLQSTKDFVEKEFAGHPLKELIYIHLCF FT FDANNMAIDYNSGMNNAQMYSAQAVRARFAILKSHAYRNVLTGTYDKNKMLEYNHETCV FT NWFDCDFVMDEKKIENDLETPTDAEVFPHSKVTPLDTQAMVGQSIITSVQKAAALILEK FT CAKFTTKTLENFLICLKDAIHGAFASWMPNIEQAFSWFGNIFVVLKKWASSIHDGIGGL FT LVGIEECLYMGVAIVSSTCIVALIEKFLVATKTIASPCNAPTLFLAGLTAAVGSTYLFT FT KGIEKSNVITSMMEFVSLSCGKLLNAAFGADLSSRVAEDNGQFGPGIVLESLAATMESW FT STKSLHEIGRSFGAITQIKNGAVAMRDIVIYLFTSLGDIGSKILGFESQVLSDLSILLG FT ENVADWLDECDCMVAFMLEFTSNAREIFDRLAQLIEKGRSIRAGLLKTVHRGSPQVMTL FT VTKALEKLTELHNSIVMAGSNGSRRAPFMVFFTGASGVGKTSVVQRMSANWLQQEQLGS FT NEVYARNGQDPFWSGYRRQAVVTYDDFGAVPGLVSNEAEIINVVSRNPHAVNMADLKEK FT GMYFDSRLIIASSNFLAANPESGVHDAEAYERRRHCVIKVTLKNGVPYNPANPCGNQEY FT ALLDSKSPFHVLRVFETYEELWSFIYNRFKEHEENEQTFLSSLPIPEGTEADALKNLVG FT ISVAIGSIGPQAVMKYAAQHLPGHHFLISDGDTVYFWLEDGTVTRVNVKNLGLSNLEKA FT ELQQRSLTCALTYQNLAKLFPTINPLAVLYAKNIVKKGWILEDLSISSACTDEFMKGQI FT ARLPEWQRAYLHVLGRHLQDAGDKGWFRNCLEETKKALRASYVWEYKKWPFAMKLAVGT FT LIAIFGGAVVYSLLQNLWGCAGEASFVVGAAALFSEGSKLEAQSLPPNKVAGEYLFRNK FT KVRVRNWEGQAPCFGDTAGWIADNCMATLNVLGNRIQVCLMPNRGFLIVNHFARAIPHG FT AMVQLESSLSSTYFVWERKKLTLFEGNELALYVSSMIPKVVDSLQTRVVYDAESLPESF FT KAIFFSYKFDPTLQQMIPEIGEIMCRKKNQTLTVCSGEYRRKVPLHLQYENSTIKGDCG FT SLIMVEVDGKMKLVAIHVAGTGQLASRAFIPFDERFAQTTGQSDFVMNYTEWAMPEILG FT PGCRVIGAIAKEHQVAVGGKTSFVETPQEWHLDTPCDKLPSVLKRNDVRLAGTANADYD FT PFSVGMTKYAKEAGPFDADVLVTVCEEIKETWYDAQGDFTFDEVSLEVALNGVANLEYF FT DAIVLSTSEGYPYRLDRKSGDKGKARFVDGEAGDYTITNSQMLQDIAWFENESKVRVPD FT LYCIECVKDERLPKRKVLETPKSRLFTVLPMSYNLVIRKKFLNFVRFFMTRRDVLPCQV FT GVNPYSREWSRIACKLLEKGNNILCCDYSRFDGFLPKCIMSQIGHLIGTFMKKDEAEVE FT QICNLLLACSGRYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAFRMCFADNPM FT VRESFDTHVSLVVYGDDNLISVSDAISAKFNGEFLVDFFLKLSITVTDGVDKTKKGISF FT RRLADCDFLKRGFKNLPDGEWIGPMSRESLWPQLHFVRAKKLEMADAYVANLNNILREL FT WLHSANEATELRRKALRSLKWIEPARLLTLGQIAEFYEEQRNGDCTFLAACNRTENLDL FT LDPLIPGQLPVATQQILPGLLVAAEKHCTESLEDYYVISLATARKFATPDDGMVISFPY FT GCGRGGLPTQQFMQENVIRKGCNIRKQFERALSESNKKPKGILIISQSSVVPAYVFAIL FT LLAATGKINRVVSNLALTRATQICKSLKYLPENFPDFF" XX SQ Sequence 5836 BP; 1651 A; 1024 C; 1429 G; 1732 T; 0 other; tgtttaaatt aaatatttaa acaaacagct ttcgttacta aaacagcttt cggttacgat 60 tctctttctt caatcttttc tttcaaacag ctttctgaat actttctttc tgaaacgcct 120 tcttaaacag ctttcttaca attcacgatt catttcgctt ccttaaactt tgaaatggct 180 tctgaattgg cttccgtgtg tgttggtttc ttacgatgct ccatggggtt acaatccact 240 aaggattttg tggaaaaaga atttgctggg cacccattga aagaattgat ttacatacat 300 ttgtgtttct ttgacgcaaa taacatggca attgattata actctgggat gaataacgct 360 cagatgtact cggcccaggc cgtgagagca cgatttgcga tactgaagtc gcatgcttac 420 cgtaatgtgc taactggcac ttacgataag aacaagatgc tggagtacaa tcacgaaaca 480 tgcgtcaact ggtttgattg cgattttgtg atggatgaga agaaaattga aaatgatctt 540 gaaactccaa cagacgctga agtttttccc catagtaaag tcactccttt ggacactcaa 600 gctatggttg gacaaagcat tatcacaagt gtgcagaagg cagccgcatt aatattggag 660 aaatgcgcga aatttaccac aaagacactt gaaaacttct tgatatgctt gaaggatgct 720 attcatgggg cttttgcttc atggatgcca aatattgaac aagcattttc ttggtttggg 780 aatatttttg ttgttctcaa aaagtgggct tcttctatcc atgatgggat tggaggtttg 840 ttggtgggta tagaggaatg cttgtatatg ggtgttgcta tagtatcctc tacttgtata 900 gtggcactta ttgaaaaatt tttagtggcc accaagacga ttgcaagccc atgcaatgct 960 ccaactttgt ttttggcagg gttgactgca gcggtgggat ccacttacct attcacgaaa 1020 ggtatagaaa aatctaatgt gattactagt atgatggagt ttgtttcatt atcttgtggt 1080 aaattgctga atgcagcctt tggggctgat cttagtagta gggtggcaga agacaatggt 1140 cagtttggcc caggcatagt cctggaaagt ttggccgcca ctatggaatc atggtccacg 1200 aagtcgctgc atgaaattgg gcgctcgttt ggagcaataa cacaaattaa gaatggcgca 1260 gttgctatgc gtgacattgt tatttaccta tttacgtcct tgggcgatat tggcagtaag 1320 atcttaggat ttgaatccca agtcttgtct gacctttcta ttttgcttgg agagaatgtt 1380 gcggattggt tagacgaatg tgattgcatg gtggctttca tgctggagtt cacatcaaat 1440 gctagggaaa tttttgatcg tttggcgcag cttatcgaga aaggaagatc aatacgtgca 1500 ggtttgctca aaactgtaca taggggctca cctcaggtga tgacattggt caccaaggca 1560 cttgaaaagt tgacagagtt gcataactct attgtcatgg ctggttcgaa tggctcaaga 1620 agagcaccct tcatggtttt cttcacaggg gcttctggag ttggcaagac ttccgttgtg 1680 caaagaatga gtgccaattg gttacaacaa gagcaacttg gttctaatga agtctacgca 1740 cgaaatggcc aagacccttt ctggtcaggc tatagacgtc aagcagttgt aacttatgac 1800 gattttggtg cagttccagg cttggtgtct aatgaagcgg aaattatcaa cgtagtttcc 1860 agaaatcctc atgcggtcaa catggcagat ctcaaagaga aaggcatgta ttttgattct 1920 aggttgataa tcgcaagcag caatttcctg gcagcgaacc cagagtcagg ggtgcatgat 1980 gctgaagcct atgagaggcg gaggcactgt gtaatcaagg tgacattgaa gaatggagtg 2040 ccttataatc cagcaaatcc gtgtggcaat caggaatatg ctctcttgga ttcaaaatca 2100 ccttttcatg tattacgagt gtttgaaact tatgaggagc tgtggtcttt tatctacaat 2160 agatttaaag aacacgagga gaatgaacaa acttttttgt cctccttgcc tatacctgaa 2220 ggaacagagg ctgacgcact taaaaatttg gttggaataa gtgttgcgat cggttctata 2280 ggtccgcagg ctgtgatgaa gtatgctgca cagcatcttc ctgggcatca tttcctaata 2340 tctgatgggg atacagtgta tttttggttg gaagatggta cggtgactag ggtaaatgtt 2400 aaaaatcttg ggctatctaa tctggaaaag gctgagttgc aacaacggag cttaacttgt 2460 gccttgacgt accaaaattt ggctaagttg tttccaacga taaacccctt agcggtcttg 2520 tatgcaaaaa atattgttaa gaaaggctgg attttggagg acttgtccat ctcttctgca 2580 tgcacagatg agtttatgaa agggcaaatt gcgcgtctgc cagaatggca aagagcttat 2640 ttgcacgttc taggtaggca tctacaagac gcgggtgaca aaggttggtt taggaattgc 2700 ctcgaagaaa caaagaaagc acttagggca tcctatgtgt gggaatacaa gaaatggccc 2760 tttgcgatga aattggcagt aggaactttg attgccatct ttggaggtgc agtagtgtat 2820 tccttgctgc aaaatctgtg gggatgtgca ggagaagctt catttgtcgt tggcgctgct 2880 gcattattct ctgagggaag taagctggag gctcaaagtt tacctccgaa taaggtggca 2940 ggcgagtatc tgtttcgtaa caagaaagtg cgagttcgca attgggaagg ccaagctcca 3000 tgctttggag atactgcagg ttggatcgca gataactgta tggcaacttt aaatgtgctt 3060 gggaaccgga tacaagtttg tcttatgcca aacagagggt ttctgatagt taatcacttt 3120 gccagagcaa ttccacatgg tgcgatggtt cagctggaat caagtctatc tagcacatat 3180 ttcgtgtggg aaagaaagaa gctgacactc tttgaaggca atgaattggc gctttatgta 3240 tcttctatga tcccaaaagt tgtagattcc ctccaaacaa gagtggttta tgatgctgaa 3300 tctttgcctg agagctttaa ggcaattttc ttttcataca agtttgaccc aaccttacag 3360 caaatgatac ctgagatagg tgagattatg tgcagaaaga aaaatcaaac tttgactgtc 3420 tgttcgggag agtatcgtag aaaagtaccc ctacatttgc aatatgagaa tagtacaatt 3480 aaaggggact gtggttcttt gatcatggtg gaggtagatg gcaaaatgaa actggttgct 3540 attcatgtcg cagggacagg gcaattggcg tcacgtgcct ttataccatt tgatgagagg 3600 tttgcgcaaa caacagggca aagtgatttt gtgatgaatt acacagaatg ggccatgcca 3660 gaaattttgg gcccaggttg tcgagtgatc ggtgctattg ccaaggagca ccaagttgca 3720 gttggtggga agacaagctt tgtggaaaca ccacaagagt ggcacttaga cactccttgt 3780 gacaagttac ccagtgtttt gaagagaaac gatgtgagat tggctggaac tgccaatgct 3840 gattatgatc ctttttcagt gggcatgacc aagtatgcta aagaggctgg cccttttgat 3900 gcagatgtgc tagtgacagt gtgtgaagaa attaaggaaa cttggtacga tgcacaagga 3960 gacttcacgt ttgatgaggt atctcttgaa gtggcactta acggggtggc caatttggag 4020 tactttgacg ccattgtatt aagcacctcg gaaggatacc cttaccgttt ggaccggaaa 4080 tcgggggata aaggaaaagc tcgctttgtt gatggtgagg caggagacta taccataaca 4140 aattctcaaa tgctacagga tattgcctgg tttgaaaatg aaagtaaagt gcgtgtgcca 4200 gacctgtact gcatagaatg tgtcaaagat gagagattgc ccaagcgtaa ggtgttagaa 4260 actccaaaga gcaggctgtt cacagtgttg ccaatgtcct acaatttggt cataaggaag 4320 aaatttctga attttgtcag atttttcatg accaggagag atgtgctacc ttgccaagtg 4380 ggtgttaatc catattcgcg ggaatggagc aggattgcat gcaaattact tgagaaggga 4440 aataatatat tgtgttgcga ttatagtcgc tttgatggct tcctacccaa atgcatcatg 4500 tcacagatag gacatcttat aggaacattc atgaaaaaag atgaagcaga ggttgaacag 4560 atttgcaact tgctcctggc ttgtagcggg cgttacgcca tttgtgagaa attgttatat 4620 agagttgaaa atggtattcc ttctggcttt cctttgacag tcattgtcaa ttcaattctg 4680 aatgaaattc ttgtcaaata cgcttttagg atgtgctttg cagacaaccc tatggtgaga 4740 gagagcttcg atactcacgt ttcgttggtt gtgtatggag atgacaactt gatttcagtt 4800 tctgatgcga tatctgcgaa atttaatgga gaatttcttg tggacttctt cctaaagttg 4860 tccataactg tgacagatgg ggtggataaa acaaagaagg gcatctcttt tagaagacta 4920 gctgattgtg acttcttaaa aagaggattc aagaatttgc cagatggaga atggatcggt 4980 cccatgtcaa gagagagctt gtggcctcaa ttgcattttg ttcgtgccaa gaaattagaa 5040 atggccgatg cctatgtggc aaatttgaac aatatcttgc gcgagttatg gctgcacagt 5100 gccaatgaag caacggagtt acgaaggaaa gcacttagga gcttgaagtg gatagagcca 5160 gcaaggcttt tgactcttgg gcaaattgca gaattttatg aggaacagag gaacggagat 5220 tgcacttttc ttgctgcatg caatcggaca gaaaatcttg atctgttgga tcctttaatt 5280 ccaggtcaat tgcctgttgc gacacaacag attttgcctg gattgttagt ggctgctgag 5340 aaacattgta ccgaatcatt ggaagattat tatgtaatct ctttggccac cgcaagaaaa 5400 tttgcaacac cagacgatgg catggtgatt tcttttcctt atgggtgtgg acgtggagga 5460 ttgcccacgc agcaatttat gcaagagaat gtcattagga aaggctgcaa catacgaaaa 5520 cagtttgaaa gagcactctc tgaaagtaac aagaaaccta aaggcatctt gattatttcc 5580 caaagttctg tagttccagc ttatgtattt gcaattttac tgctagctgc aacggggaag 5640 ataaatcgtg tggtaagcaa cctggctctc actagagcaa cacaaatttg caaaagtctc 5700 aagtaccttc ctgaaaattt ccctgatttc ttttgaagtt atgtgtggtg tgcttgttag 5760 tataatataa aataaatcct taagtatttg taatgctttg tattttacgt tgtaaaatga 5820 tttgtatttt tatatc 5836 //