ID   AB079773; SV 1; linear; genomic RNA; STD; VRL; 1447 BP.
XX
AC   AB079773;
XX
DT   16-AUG-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
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DE   Japanese yam mosaic virus gene for polyprotein, partial cds, isolate:J4.
XX
KW   .
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OS   Japanese yam mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1447
RA   Fuji S., Nakamae H., Furuya H., Naito H.;
RT   ;
RL   Submitted (12-FEB-2002) to the INSDC.
RL   Shin-ichi Fuji, Akita Prefectural University, Faculty of Bioresource
RL   Sciences; 241-7 Kaidobata Nishi Shimoshinjo Nakano, Akita, Akita 010-0915,
RL   Japan (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640, Fax:81-18-872-1678)
XX
RN   [2]
RA   Fuji S., Nakamae H., Furuya H., Naito H.;
RT   "High diversity of the 5'-UTR, P1 and CP genomic regions of several
RT   Japanese yam mosaic virus and heterogenous population in a yam plant";
RL   Unpublished.
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DR   MD5; 2bc717f230fc5eb7dadaa59684e75c09.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1447
FT                   /organism="Japanese yam mosaic virus"
FT                   /isolate="J4"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:79917"
FT   CDS             128..>1447
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /note="5'-terminal region"
FT                   /note="first protein and helper component regiion"
FT                   /db_xref="GOA:Q8JW15"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JW15"
FT                   /protein_id="BAC07496.1"
FT                   /translation="MESHTHYQLQFGLLPTIIVGVNGSIITTAALSGKTLKTEQGNSKM
FT                   VSIAESNKAFLQKMLLEQQQQRNMFARWEEEYNAARMTKPESYKIKMTKKQMADQRRRE
FT                   TRNKERELIKQENILEKCVIGPWGPPISVLSIASGPLPSQEIDVKKWPLYVKRSQKVKR
FT                   APAKPLEVSAGTFDKFLMDLTSIIMSKSLPFDIIERNINDSKVHMKAGKTYLKVKTAHE
FT                   DHKNKVRDVRIDKFTQSLLERMIKRTAGFAHHKVQQLQPGFSGIILRKEMLQGTQSRAL
FT                   GEIFIVRGCHEGKLYDARVKLSRTIRHNIVHYSDPGILFWKGFNSTFQQYRKQDRTHTS
FT                   ETNLDVEECGEVAALLCLALFPCGKITCNRCVEENLLSEGQATHDNILRKQQEIKQVVY
FT                   QRHPQFKHALQILERQSKALQSVNNNYKDFTEIHSLSEGQA"
XX
SQ   Sequence 1447 BP; 543 A; 282 C; 307 G; 315 T; 0 other;
     aaaatataaa atctcaacaa gaattaacga aaaccaagaa tctacaagaa atctttgttt        60
     gcgttaaaca acgacgactc aagaccaaac caacaaccac aacaccaaca acaccaccta       120
     cgcacaaatg gaatcacaca cacactacca acttcaattc ggattgctgc caactatcat       180
     tgttggagtg aacggatcaa tcatcacaac tgcagcactg tcgggaaaaa cactgaaaac       240
     cgagcagggt aactcgaaaa tggtgagcat tgctgagagt aacaaagcgt ttctgcaaaa       300
     gatgctgctg gagcaacaac aacaacgtaa tatgtttgct cgatgggagg aggaatataa       360
     cgcagcacga atgacaaaac ccgaatctta caagatcaaa atgactaaga aacagatggc       420
     tgaccagaga aggcgggaaa cacgcaataa ggaaagagaa ctgattaagc aagagaacat       480
     tctggagaag tgcgttatag gaccatgggg tccacctata agcgtgctga gcattgcatc       540
     tggaccatta ccatcacaag aaattgatgt gaagaaatgg ccgttatatg taaaacgctc       600
     acagaaggtg aagagagcac cagcaaaacc acttgaggta agtgctggaa catttgataa       660
     gtttctcatg gacttaacat caatcataat gtcaaagtca ctaccatttg acataataga       720
     gaggaacata aacgactcta aagtgcatat gaaagcagga aaaacatact taaaagttaa       780
     aacagcgcat gaagaccata agaataaagt tagggatgtg cgtattgata aattcacaca       840
     atcgctacta gagcggatga ttaagagaac agcagggttt gcacaccaca aggttcaaca       900
     attgcaacct ggttttagtg gaattatttt gaggaaagaa atgttgcaag gaacacaatc       960
     acgagcactt ggagaaattt ttattgttcg tgggtgtcat gaaggaaagc tatacgatgc      1020
     tcgtgtaaag ctgtctcgca ctatacgaca taatatagta cattattctg accctggaat      1080
     cctgttctgg aagggcttta atagtacatt tcaacagtac aggaaacagg acagaaccca      1140
     cacaagtgaa actaatttag acgtggaaga gtgtggcgaa gttgctgctt tactatgttt      1200
     ggcactcttc ccatgcggaa aaataacttg taatagatgc gtggaagaga atttgctttc      1260
     agaaggtcag gcaacacatg acaatatact tcggaagcaa caggagataa agcaagttgt      1320
     atatcagaga caccctcaat ttaaacatgc attgcagatc ttggaaagac agagcaaggc      1380
     cctacaaagt gtcaacaaca actataaaga tttcactgaa atccacagcc tatcggaagg      1440
     tcaagcg                                                                1447
//