ID   AB079771; SV 1; linear; genomic RNA; STD; VRL; 1336 BP.
XX
AC   AB079771;
XX
DT   16-AUG-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Japanese yam mosaic virus gene for polyprotein, partial cds, isolate:J2.
XX
KW   .
XX
OS   Japanese yam mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1336
RA   Fuji S., Nakamae H., Furuya H., Naito H.;
RT   ;
RL   Submitted (12-FEB-2002) to the INSDC.
RL   Shin-ichi Fuji, Akita Prefectural University, Faculty of Bioresource
RL   Sciences; 241-7 Kaidobata Nishi Shimoshinjo Nakano, Akita, Akita 010-0915,
RL   Japan (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640, Fax:81-18-872-1678)
XX
RN   [2]
RA   Fuji S., Nakamae H., Furuya H., Naito H.;
RT   "High diversity of the 5'-UTR, P1 and CP genomic regions of several
RT   Japanese yam mosaic virus and heterogenous population in a yam plant";
RL   Unpublished.
XX
DR   MD5; 68a3d305bf970920e47bb3d2e76e8eda.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1336
FT                   /organism="Japanese yam mosaic virus"
FT                   /isolate="J2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:79917"
FT   CDS             152..>1336
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /note="5'-terminal region"
FT                   /note="first protein and helper component regiion"
FT                   /db_xref="GOA:Q8JW17"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JW17"
FT                   /protein_id="BAC07494.1"
FT                   /translation="MATCVGKLAETSLNNTIAFQLQFGTLPPVFIGIPATSCKTIATDK
FT                   NDEHVIQSKSTEAQKKMNVNKAFVHKMHAEYNKQCAVLDKWEEEYNTTRSTNPSSYKVV
FT                   LTKQQKSAVHRYNMEKARKKLKEQEDILNKCIIGPWGPSMNAFSIASGPLPSAMEAELK
FT                   WPLHQTRSQRIKGTPKQPVTLGRGEFAKFVKNLTTLMTQKSLLLELCGKHVHRVCVRRE
FT                   HKKVYLKINTKHEEGFNKARDVVMDNFTQRLLELMITRTSGNNRHSVQNIKPGHSGFVL
FT                   NRETLCGTQSRAYGRIFIVRGNHEGKLYGARIKLSQTIRRKIVHFADPGVKFWNGFNTA
FT                   FQRYRKQDREHTCETDLDVEECGEVAALLCLALFPCGKITCNKCVEENLLSEGQA"
XX
SQ   Sequence 1336 BP; 473 A; 269 C; 279 G; 315 T; 0 other;
     aaaatataaa atctcaacaa gactaacgaa aaccaagcaa ccaaatcttt gtttacgttc        60
     gtttctcgac actcgaattt aaattcgaaa tctcgcaact cgcaaagaat cgtgcgttcc       120
     ggtctttgca ttccacaccc acattcacac aatggcaacc tgcgttggaa aactcgccga       180
     aacaagtctg aacaacacaa tcgcattcca gttgcagttt ggaacacttc caccggtatt       240
     tattggaata cctgcaacct cttgtaagac aatcgcaacg gacaaaaatg acgaacatgt       300
     cattcaaagt aagtctactg aagcacaaaa gaagatgaat gtcaacaaag cattcgtaca       360
     caaaatgcat gctgaatata acaaacaatg tgcagtgctt gacaaatggg aggaagagta       420
     caacacaact cgaagtacga atcctagttc atacaaagtt gtgttgacga aacaacagaa       480
     gagtgctgtg catagataca atatggagaa agcacggaag aaactgaagg aacaggaaga       540
     cattctgaat aaatgcatca taggtccgtg gggcccttcc atgaatgctt tcagtattgc       600
     atctggacca ttaccatcag caatggaggc agaattgaaa tggccacttc accagaccag       660
     atcacaacga atcaaaggga ctccaaagca accagtaaca ctcgggagag gagagttcgc       720
     taaatttgtc aaaaacttaa ccacactaat gacacaaaaa tcactgctcc ttgaattgtg       780
     tggtaaacac gtgcacagag tttgtgttcg aagggagcac aagaaggttt acctgaaaat       840
     aaacacaaag catgaagaag gtttcaataa agcgagggat gttgtgatgg acaatttcac       900
     acaacgttta cttgaactaa tgataacacg aacatcaggc aacaaccgac actcagttca       960
     aaacataaaa cctggacata gtggttttgt cttgaataga gagactttat gtggcacaca      1020
     atctcgtgca tatggaagaa tattcatcgt tcgtggcaat cacgagggca agctatatgg      1080
     tgcacgtatt aaattatccc aaacaatacg caggaagata gtgcattttg ctgatccagg      1140
     cgttaaattt tggaatgggt tcaacacagc ttttcaaaga tacaggaaac aagatcgtga      1200
     gcacacatgt gaaacggatc ttgatgttga agagtgtggt gaggtcgcag ccttattgtg      1260
     tcttgctctt tttccttgtg ggaaaataac atgcaataaa tgtgtagaag agaatttact      1320
     atcggaaggt caagcg                                                      1336
//