Dbfetch

Dbfetch

ID   AB076531; SV 1; linear; genomic RNA; STD; VRL; 864 BP.
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AC   AB076531;
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DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
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DE   Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:PV0054.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
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RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the INSDC.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
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RN   [2]
RX   PUBMED; 12029167.
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83(Pt 6):1511-1521(2002).
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DR   MD5; 1ebbf6b1d0934a64a1417782d65ce0bd.
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FH   Key             Location/Qualifiers
FH
FT   source          1..864
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="PV0054"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>864
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /note="coat protein"
FT                   /db_xref="GOA:Q8JWT2"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JWT2"
FT                   /protein_id="BAC02867.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKEREKAEKERERQRQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVQGL"
XX
SQ   Sequence 864 BP; 282 A; 176 C; 238 G; 168 T; 0 other;
     gcaggtgaaa cgcttgatgc aggtttgacg gaagagcaaa agcaggcaga gaaggagaag        60
     aaagagagag agaaggcgga aaaggagcga gagaggcaaa ggcagttggc actcaagaaa       120
     ggcaaggatg ttgcacaaga ggagggaaaa cgcgacaagg aagtaaacgc tggaacctct       180
     ggaactttca gtgtacctag actcaagagt ctgacaagca agatgcgtgt gccaagatac       240
     gagaaaagag tggctctgaa ccttgatcat ctaatcctat acacgccgga gcagacggat       300
     ctatccaaca cccgttcaac gcgaaagcag tttgacacat ggtttgaagg tgtgatggct       360
     gattacgaac taacggagga caaaatgcaa atcattctca atggtttaat ggtctggtgt       420
     attgagaacg gaacctcccc gaacataaac ggaatgtggg tgatgatgga cggtgatgat       480
     caggtggaat tcccgatcaa accgctcatt gaccacgcca aacccacatt taggcagata       540
     atggcccatt tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca       600
     tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc tcgatacgca       660
     tttgacttct atgaaatgac ttctaggact ccaatacgtg cgagagaggc acacatccag       720
     atgaaagcag cagcactgcg tggcgcaaat aataatttgt tcggcttgga tggaaacgtt       780
     ggtacaacgg tagagaacac ggagaggcat acgaccgagg acgttaatcg gaacatgcat       840
     aacttactgg gcgttcaggg gtta                                              864
//